Butternut Squash & Black Bean Enchilada Skillet

(9)

This Butternut Squash & Black Bean Enchilada Skillet is a delicious, one-pan meal that’s packed with flavor. Tender cubes of butternut squash and hearty black beans are simmered in green enchilada sauce, with tortilla strips stirred in. As it cooks, the tortillas soak up the sauce. A layer of melted cheese ties everything together. It’s a satisfying, vegetarian-friendly dish that’s perfect for busy weeknights or casual get-togethers.

Recipe image of Butternut Squash & Black Bean Enchilada Skillet.
Credit:

Photographer Victor Protasio, Food Stylist Margaret Dickey, Prop Stylist Josh Hoggle.

  • This flavorful one-skillet dish is satisfying and vegetarian-friendly.
  • This dish is veggie-forward, which means plenty of fiber, vitamins and antioxidants. 
  • Save on prep time by using pre-chopped butternut squash, or chop it in advance and store in the fridge.

When the goal is to eat more veggies, our Butternut Squash & Black Bean Enchilada Skillet has your back. Antioxidant-rich butternut squash, sweet bell peppers and onions are sautéed briefly and then mixed with flavor bombs—enchilada sauce, taco seasoning and corn tortillas. Corn and black beans are the fiber-boosters, and the entire skillet is topped with melty cheese. As if it couldn’t get any better, we recommend garnishes for even more flavor—salsa, fresh cilantro, refreshing sour cream, and the kick of lime is perfection. Keep reading for our expert tips on technique, ingredient substitutions and more. 

Tips from the EatingWell Test Kitchen

These are the key tips we learned while developing and testing this recipe in our Test Kitchen to make sure it works, tastes great and is good for you too! 

  • This dish takes advantage of store-bought enchilada sauce. We chose mild green sauce, but red enchilada sauce would work too—feel free to use your favorite!
  • To save time, use pre-chopped butternut squash, or you can get a jump on the recipe by prepping the squash, bell peppers and onion in advance and storing them in airtight containers in the refrigerator.
  • This recipe includes black beans, but you can substitute any beans or vegetables you have on hand. Pinto beans would work well, and sweet potatoes could replace the butternut squash.
  • We really like the flavor from the Mexican cheese blend, but other cheeses such as pepper Jack, Monterey Jack or white or yellow Cheddar would also be delicious.

Nutrition Notes

  • Butternut squash is packed with an antioxidant called beta carotene, which is converted in our body to vitamin A—essential for good vision, healthy skin and to maintain healthy immune and reproductive systems. 
  • Black beans are full of fiber, which is essential for digestive health and regularity. They are also a source of plant-based protein, but aren’t a complete protein because they’re low in one amino acid. Fortunately, when you pair beans with corn, you get all of the essential amino acids you need. 
  • Bell peppers are brimming with vitamin C, even more than in an orange. Vitamin C is an antioxidant, meaning it can help reduce oxidative stress in the body, which is essential for cancer prevention. 
  • Corn may be considered a starchy vegetable, but it contains fiber and resistant starch, which may help with weight maintenance. In addition, corn contains two carotenoids, lutein and zeaxanthin, which have been shown to be very important for healthy vision.
Ingredients for a recipe including squash corn beans peppers cheese and sauce arranged on a board

Photographer Victor Protasio, Food Stylist Margaret Dickey, Prop Stylist Josh Hoggle.

Cook Mode (Keep screen awake)

Ingredients

Original recipe (1X) yields 6 servings

  • 2 tablespoons extra-virgin olive oil

  • 14 ounces butternut squash, cut into ¾-inch cubes (about cups)

  • 3 medium red and yellow bell peppers, thinly sliced (about cups)

  • 1 medium yellow onion, thinly sliced (about cups)

  • cups water, divided

  • tablespoons reduced-sodium taco seasoning

  • ½ teaspoon salt

  • cups mild green enchilada sauce

  • 1 (15-ounce) can no-salt-added black beans, rinsed

  • cups fresh or frozen yellow corn kernels (from 3 ears)

  • 8 (6-inch) corn tortillas, halved and cut into 1-inch strips

  • 1 cup shredded Mexican-style cheese blend

  • 3 tablespoons salsa

  • Sour cream and fresh cilantro leaves, for garnish (optional)

  • Lime wedges, for serving (optional)

Directions

  1. Preheat oven to 400°F with rack in upper third position (about 5 inches from heat source). Heat 2 tablespoons oil in a large skillet over medium-high heat. Add cubed squash, sliced bell peppers and sliced onion in an even layer; cook, undisturbed, until starting to brown, 4 to 6 minutes. Stir and continue to cook, stirring occasionally, until the onions have softened and the peppers and squash have started to become tender, 6 to 8 minutes. Add ¼ cup water; cook, stirring to scrape up any browned bits, until the squash and peppers are just tender, 2 to 3 minutes.

    A skillet with cooked vegetables including bell peppers onions and butternut squash

    Photographer Victor Protasio, Food Stylist Margaret Dickey, Prop Stylist Josh Hoggle.

  2. Stir in 1½ tablespoons taco seasoning and ½ teaspoon salt until the vegetables are well coated. Add 1¾ cups enchilada sauce, the rinsed beans, 1½ cups corn, the tortilla strips and the remaining 1 cup water; stir to incorporate. Top evenly with 1 cup cheese.

    A skillet containing a mix of ingredients including black beans sliced peppers sweet potato chunks corn and tortilla strips

    Photographer Victor Protasio, Food Stylist Margaret Dickey, Prop Stylist Josh Hoggle.

  3. Bake until the cheese has melted and the mixture is bubbling around the edges, about 10 minutes. Increase oven temperature to broil; broil until the cheese has started to brown, 2 to 3 minutes. Dollop with 3 tablespoons salsa. Garnish with sour cream and cilantro, and serve with lime wedges, if desired.

    A skillet dish with melted cheese black beans corn and red pepper slices

    Photographer Victor Protasio, Food Stylist Margaret Dickey, Prop Stylist Josh Hoggle.

Frequently Asked Questions

  • What’s the difference between enchilada sauce vs. taco sauce?

    The difference between enchilada sauce and taco sauce lies in their ingredients. Enchilada sauce is made from a variety of chiles, resulting in a smooth consistency. Taco sauce is made from tomato sauce, cayenne pepper and paprika, and it typically has a chunkier texture.

  • Can I use flour tortillas?

    You can use flour tortillas, but we prefer corn tortillas because they are sturdier and hold up better in this recipe.

  • Can I use different toppings?

    Absolutely! This dish is perfect for personalizing with various toppings. You might consider adding avocado or guacamole, scallions, jalapeños, shredded lettuce, diced tomatoes, Greek-style yogurt, cotija cheese or crema. For an added crunch, you could also sprinkle on some crushed tortilla chips.

  • How should I store and reheat leftovers?

    Store leftovers in an airtight container in the refrigerator for up to 2 days. You can reheat them covered in a 350°F oven for about 20 minutes, or microwave on medium heat in 1-minute increments until heated through.

  • What should I serve with Butternut Squash & Black Bean Enchilada Skillet?

    A green salad would complement the meal well: options include our Simple Green Salad with Citronette, Herb & Arugula Salad with Balsamic Vinaigrette or Massaged Kale Salad.

Recipe developed by Marianne Williams

EatingWell.com, September 2025

Nutrition Facts (per serving)

327 Calories
11g Fat
50g Carbs
11g Protein
Nutrition Facts
Servings Per Recipe 6
Serving Size about 1⅔ cups
Calories 327
% Daily Value *
Total Carbohydrate 50g 18%
Dietary Fiber 9g 33%
Total Sugars 13g
Added Sugars 0g 0%
Protein 11g 21%
Total Fat 11g 14%
Saturated Fat 3g 17%
Cholesterol 13mg 4%
Vitamin A 468µg
Vitamin C 124mg 137%
Vitamin D 0µg
Vitamin E 3mg 22%
Folate 88µg
Vitamin K 18µg
Sodium 794mg 35%
Calcium 187mg 14%
Iron 2mg 13%
Magnesium 95mg 23%
Potassium 902mg 19%
Zinc 2mg 16%
Vitamin B12 0µg

Nutrition information is calculated by a registered dietitian using an ingredient database but should be considered an estimate.

* Daily Values (DVs) are the recommended amounts of nutrients to consume each day. Percent Daily Value (%DV) found on nutrition labels tells you how much a serving of a particular food or recipe contributes to each of those total recommended amounts. Per the Food and Drug Administration (FDA), the daily value is based on a standard 2,000 calorie diet. Depending on your calorie needs or if you have a health condition, you may need more or less of particular nutrients. (For example, it’s recommended that people following a heart-healthy diet eat less sodium on a daily basis compared to those following a standard diet.)

(-) Information is not currently available for this nutrient. If you are following a special diet for medical reasons, be sure to consult with your primary care provider or a registered dietitian to better understand your personal nutrition needs.

Additional reporting by
Sarah Pflugradt, Ph.D., RDN, CSCS
Sarah Pflugradt

Sarah Pflugradt is a registered dietitian who holds a Ph.D. in Health and Human Performance and is a certified strength and conditioning specialist. Her extensive background in dietetics has made her a sought-after expert in family and youth sports nutrition.

and
Linda Frahm
Linda Frahm has been a copy editor and fact checker working with food and nutrition content for the past 30-plus years for consumer print and online publications.