PeptideAtlas

Below is a listing of the PeptideAtlas builds available to you. Your current default build is checked. Other PeptideAtlas pages will show you information from the selected default build. Click on any of the radio buttons below to select another build as your default. Your selection is stored in a cookie and future accesses to PeptideAtlas in this session will use the selected build.

Your current build is: Rice 2025-03

Build Name	# distinct	Organism	is_def	Description	Build Home
Arabidopsis thaliana 2021-03	535,340	Arabidopsis	N	Arabidopsis thaliana proteome build, using Arap...	arabidopsis
Arabidopsis thaliana 2023-10	596,839	Arabidopsis	Y		arabidopsis
Arabidopsis thaliana 2024-04 TAIR12	596,830	Arabidopsis	N		arabidopsis
Borrelia burgdorferi 2019-02	39,145	Bburgdorferi_B31	N	This build contains datasets from 4 strains of...
Borrelia burgdorferi 2021-02	39,839	Bburgdorferi_B31	N	This build contains datasets from 4 stains of ...
Borrelia burgdorferi 2023-05	77,030	Bburgdorferi_B31	N	This build contains datasets from 6 isolates of...	borrelia
Borrelia burgdorferi 2024-03	86,361	Bburgdorferi_B31	N	This build contains datasets from 6 isolates of...	borrelia
Borrelia burgdorferi 2024-03 ISB	81,967	Bburgdorferi_B31	Y	This build contains datasets from 3 isolates of...	borrelia
Bartonella henselae 2021-01	41,043	Bhenselae	Y
Babesia microti 2021-01	1,354	Bmicroti	Y	This build contains data from different Babesia...
Caenorhabditis Elegans 2013-09	106,300	C. Elegans	N	Schrimpf, et al. Comparative functional analysi...
Caenorhabditis Elegans 2016-06	173,245	C. Elegans	Y	Celegan proteome
Celegans 2011-08 Ens62	74,155	C. Elegans	N	Schrimpf, et al. Comparative functional analysi...
CelegansPhospho 2010-06	6,994	C. Elegans	Y	Two C. elegans phospho experiments (LTQ-FT and ...
Candida albicans 2011-12	21,881	Candida albicans	N	Vital Vialas et al. (2013) A Candida albicans P...
Candida albicans 2012-01 None Phospho	17,151	Candida albicans	N	use none phospho runs only
Candida albicans 2012-01 PTM	21,881	Candida albicans	N	Vital Vialas et al. (2013) A Candida albicans P...
Candida albicans 2014-05	61,591	Candida albicans	N	Vital Vialas et al. (2013) A Candida albicans P...
Candida albicans 2014-06 None Phospho	58,367	Candida albicans	N	use none phospho runs only
Candida albicans 2015-02	71,175	Candida albicans	N	Vital Vialas et al. (2014). A Candida albicans ...
Candida albicans 2024-03	176,568	Candida albicans	Y	added 33 new datasets	calbicans
Canis familiaris 2024-01	148,211	Canine	Y	Tissues + Urine + Plasma	canine
Chicken 2016-07	110,262	CHICK	Y	J Proteome Res. 2017 Mar 3; 16(3): 1352?1363. P...
Cow Milk 2011-12	8,476	Cow	Y	Bislev, et al., A Bovine PeptideAtlas of milk a...
Deer Tick 2021-04	69,226	DeerTick	Y	This build contains datasets from other Tick sp...
Drosophila 2011-09 Ens62	53,903	Drosophila	N	55 varied D. melanogaster samples, including Br...
Drosophila 2012-08	58,316	Drosophila	Y	Brunner, et al. A high-quality catalog of the D...
Escherichia coli 2024-02	118,565	Ecoli	N	Midha MK, Kusebauch U, Shteynberg D, et al. A c...
Escherichia coli 2024-03	83,590	Ecoli	N
Escherichia coli 2024-11 ionbot	151,590	Ecoli	Y	40 datasets with msfragger and ionbot results	ecoli
Escherichia coli Phosphoproteome 2024-10	33,017	Ecoli	Y	phosphopeptide enrichment samples	ecoli
Schizosaccharomyces pombe 2012-08	49,220	Fission Yeast	Y	Gunaratne et al. Comprehensive Mass Spectrometr...
Halobacterium 2012-02	26,435	Halobacterium	N	Halo Build which uses non-Icat runs from old Ha...
Halobacterium 2013-08	16,138	Halobacterium	N	Van, et al., Halobacterium salinarum NRC-1 Pept...
Halobacterium 2014-11	37,940	Halobacterium	Y
HoneyBee 2013-09	35,036	Honeybee	Y	Queenie, et al., A honey bee (Apis mellifera L....
Horse 2013-04	24,082	Horse	Y	The Equine PeptideAtlas - a resource for develo...
Human 2021-01	2,520,734	Human	N	Human all proteome	human
Human 2022-01	2,954,162	Human	N	Human all proteome	human
Human 2023-01	3,480,387	Human	N	Human all proteome	human
Human 2024-01	3,945,444	Human	N	Human all proteome	human
Human 2025-01		Human	Y	Human all proteome	human
Human Brain 2015-01	127,727	Human	N	Human Brain Proteome
Human CSF 2014-09	45,123	Human	N	Human CSF proteome
Human Glyco Synthetic Peptides 2012-07		Human	N	Hüttenhain R., et al. "N-Glycoprotein SRMA...
Human Glycocapture 2012-03	15,029	Human	N	An atlas of all human N-glycosite experiments
Human HLA 2022-09	640,102	Human	N	Human HLA peptidome
Human HLA 2023-11	865,922	Human	Y	Human HLA peptidome	human
Human HLA 2025-06	1,420,208	Human	N	Human HLA peptidome	human
Human Liver 2013-08	36,738	Human	N	Ying W, Jiang Y, Guo L. et al., A dataset of hu...
Human NON-HLA 2023-01	3,031,302	Human	N	Human all proteome. HLA enrichment datasets hav...	human
Human NON-HLA 2023-06	2,847,132	Human	Y	Human all proteome. HLA enrichment datasets hav...	human
Human Others 2013-08	307,290	Human	N	Contains all Human 2013-08 data except urine, p...
Human Phosphoproteome 2017-01	135,187	Human	N	Human phosphopeptide enrichment samples.
Human Phosphoproteome 2022-04	264,244	Human	Y	phosphopeptide enrichment samples.	human
Human Phosphoproteome 2025-01	272,103	Human	N	phosphopeptide enrichment samples.	human
Human Plasma 2021-07	206,001	Human	N	Human Plasma Proteome	human
Human Plasma 2023-04	263,150	Human	N	Human Plasma Proteome	human
Human Plasma 2025-08	282,399	Human	Y	Human Plasma	human
Human Plasma Extracellular vesicle 2021-06	94,831	Human	N	Human Plasma Extracellular vesicle Proteome	human
Human Plasma Extracellular vesicle 2023-04	181,045	Human	Y	Human Plasma Extracellular vesicle Proteome	human
Human Plasma FDR 5% 2010-05	23,886	Human	N	A more inclusive plasma build. Farrah, et al., ...
Human Plasma N-Glyco 2010-05	4,508	Human	N	Glycocapture experiments only. Farrah, et al., ...
Human SRM 2012-08	150,826	Human	N	The data sets were searched with X!tandem and M...
Human SUMOylation Proteome 2025-02	126,761	Human	Y	SUMOylation enrichment samples	human
Human Testis 2017-01	289,264	Human	N	Testis and Spermatozoa samples
Human Urine 2022-02	130,687	Human	Y	Human urine proteome	human
THISP Validation Build 2016-04	122,403	Human	N	THISP L4
Leptospira interrogans 2008-01	18,273	Leptospira interrogans	N	Malmstrom, et al. Proteome-wide cellular protei...
Leptospira interrogans 2013-08	29,073	Leptospira interrogans	Y	Malmstrom, et al. Proteome-wide cellular protei...
Maize 2022-07	330,939	Maize	N	All maize samples mapped to a complete referenc...
Maize 2023-09	372,811	Maize	Y	All maize samples mapped to a complete referenc...	maize
Maize Phosphoproteome 2024-12	16,066	Maize	Y	phosphopeptide enrichment samples	maize
Mouse 2014-12	141,900	Mouse	N	Mouse Proteome
Mouse 2016-01	224,625	Mouse	Y	Mouse Proteome
Mouse Glyco Synthetic Peptides 2012-07	2,339	Mouse	N	Hüttenhain R. et al. N-Glycoprotein SRMAtlas: A...
Mouse Phosphoproteome 2022-11	213,361	Mouse	N	phosphopeptide enrichment samples.	mouse
Mouse Phosphoproteome 2024-02	213,572	Mouse	Y	phosphopeptide enrichment samples. PTMProphet r...	mouse
Mouse Plasma 2011-12 Ens64	7,654	Mouse	N	20 mouse plasma samples, including some cancer ...
Mouse Plasma 2023-04	78,002	Mouse	Y	blood plasma samples	mouse
Mycobacterium tuberculosis 2013-05	48,404	Mtuberculosis	N	Olga T. Schubert, Jeppe Mouritsen, Christina Lu...
Mycobacterium tuberculosis 2013-07	50,234	Mtuberculosis	Y	Includes data for three mycobacterial strains: ...
Mycobacterium tuberculosis Light DirtyPeptide 2013-05	16,461	Mtuberculosis	N	Olga T. Schubert, Jeppe Mouritsen, Christina Lu...
Mycobacterium tuberculosis Phosphoproteome 2024-09	21,296	Mtuberculosis	Y	Frando A, et al. The Mycobacterium tuberculosis...
Pseudomonas aeruginosa 2021-01	59,095	P. aeruginosa	Y	Proteomes of P. aeruginosa PAO1 strain grown un...	paeruginosa
Plasmodium falciparum 2012-09	14,460	Pfalciparum	Y	Scott et al. Total and Surface Proteomics of M...
Plasmodium falciparum Phospho 2023-10	35,147	Pfalciparum	Y		pfalciparum
Pig 2011-08 Ens62	13,846	Pig	N	Hornshøj, H., Bendixen E., Conly, L., Andersen ...
Pig 2014-11	87,799	Pig	Y	The Pig Peptide Atlas: a resource for systems b...
Plasmodium yoelii 2012-09	10,110	Pyoelii	Y	Scott et al. Total and Surface Proteomics of M...
Rat 2013-11	288,291	Rat	Y	Low et al. Quantitative and Qualitative Proteom...
Rice 2022-12	230,700	Rice	N	Rice samples	rice
Rice 2025-03	258,029	Rice	Y	Rice samples	rice
Rice Phosphoproteome 2022-04	14,013	Rice	Y	phosphopeptide enrichment samples.	rice
Labeo rohita 2019-09	148,652	Rohu	N
Labeo rohita 2020-07	150,781	Rohu	Y	Nissa, M.U., Reddy, P.J., Pinto, N., Sun, Z., G...	rohu
SARS-CoV-2 2020-06	217,420	SARS-CoV-2	Y	SARS_CoV-2 datasets	sars_cov-2
SARS-CoV-2 2020-06 Synthetic	26,850	SARS-CoV-2	N	SARS_CoV-2 recombinant protein dataset
Staphylococcus aureus COL 2013-10	25,374	Staphylococcus aureus COL	Y	Becher et al. A proteomic view of an important ...
Staphylococcus aureus HG001 2014-09	74,703	Staphylococcus aureus HG001	N
Staphylococcus aureus HG001 2015-12	84,106	Staphylococcus aureus HG001	Y	Becher et al. A proteomic view of an important ...
Staphylococcus aureus NCTC8325 2013-10	71,765	Staphylococcus aureus HG001	N	S. aureus NCTC8325
Streptococcus pyogenes 2011-07	8,952	Streptococcus	Y	Lange, et al. Targeted quantitative analysis of...
Streptococcus pneumoniae D39 2019-06	32,664	Streptococcus pneumoniae D39	Y	Schmidt et al. In vivo proteomics identifies th...
Streptococcus pneumoniaeTIGR 2019-06	29,731	Streptococcus pneumoniae TIGR	Y	Schmidt et al. In vivo proteomics identifies th...
Trypanosoma brucei Phosphoproteome 2024-12	16,400	TBrucei	Y	phosphopeptide enrichment samples	tbrucei
Toxoplasma gondii Phosphoproteome 2025-05	31,361	Toxoplasma	Y	Phospho enriched datasets	toxo
Yeast 2013-03	86,420	Yeast	N	90 varied experiments on S. cerevisiae -- all 6...
Yeast 2022-06	485,199	Yeast	Y		yeast
Yeast non-ICAT 2010-09	100,810	Yeast	N	47 varied non-ICAT datasets on S. cerevisiae. M...
Yeast Phosphoproteome 2024-08	44,900	Yeast	Y	Phospho enriched datasets	yeast
Yeast QQQ-Atlas 2010-09	28,204	Yeast	N	Picotti et al. A complete mass-spectrometric ma...
Yeast_MRM_Atlas_2008-03_P0.9	3,310	Yeast	N	Analysis of potential yeast MRM transitions by ...
Zebrafish 2014-03	108,050	Zebrafish	Y	1. Pandey et al. Annotation of the zebrafish ge...