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Query Transitions Transition Lists SRMAtlas Builds PASSEL Experiments PASSEL Data

Query Transitions

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Peptide Sequence:

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Peptide Length:

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Number of Peptides per Protein Constraint:

Target Instrument:

Transition Source:

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SwissProt Ensembl IPI

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Parameter	Weight	Description
4H:		4 consecutive hydrophobic residues: C,F,I,L,V,W,Y
5H:		5 straight hydrophobic residues: F,I,L,V,W,M
Hper:		More than 75% hydrophobic residues (F,I,L,V,W,M)
ssr_p:		Peptides with SSR hydrophobicity < 10 or > 46
C:		Cysteine-containing peptides
D:		Asparagine-containing peptides
M:		Methionine-containing peptides
P:		Proline-containing peptides
R:		Arginine-containing peptides
S:		Serine-containing peptides
W:		Tryptophan-containing peptides
nQ:		N-terminal Glutamine
NxST:		Peptides without NxST motif
nE:		N-terminal Glutamic Acid
nM:		N-terminal Methionine
Xc:		Any C-terminal peptide
nX:		Any N-terminal peptide
bAA:		Any non-standard amino acid (BJOUXZ)
BA:		More than 4 basic (protonatable) sites: H, K, R, n-term
EC2:		More than 2 basic (protonatable) sites: H, K, R, n-term, each addional charge is penalized more strongly
obs:		Peptides observed in Peptide Atlas
PATR:		Peptide exists in PA transition resource
min_l:		Minimum length for peptide
min_p:		Peptides under min length
max_l:		Maximum length for peptide
max_p:		Peptides over max length

Heavy Label:

Labeled Transitions:

Default Light only L & H Heavy only

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Allowed Ion Types:

y ions b ions Neutral-loss ions

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