| PATR00001 | AndersonHunter2006_Hs-Plasma | Anderson and Hunter 2006 Transitions from Human Plasma | Human | Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins | AndersonHunter2006_Hs-Plasma_MRM.tsv | 
  
    | PATR00002 | KeshishianEtAl2007 | Keshishian et.al. 2007 transitions from multiple organisms | Multiple | Quantitative, Multiplexed Assays for Low Abundance Proteins in Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution | KeshishianEtAl2007_MRM.tsv | 
  
    | PATR00003 | McKayEtAl2007_Hs-Plasma | McKay et.al 2007 transitions from Human Plasma | Human | The development of multiple reaction monitoring assays for liver-derived plasma proteins | McKayEtAl2007_Hs-Plasma_MRM.tsv | 
  
    | PATR00004 | StahlZengEtAl2007_Hs-Plasma | Stahl and Zeng transitions from 2007 study on detection and quantification of plasma proteins using glycopeptides | Human | High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites | StahlZengEtAl2007_Hs-Plasma_MRM.tsv | 
  
    | PATR00005 | KayEtAl2007_Hs-Plasma | Kay et.al 2007 transitions from detection and quantitation of apolipoproteins in human serum | Human | The application of ultra-performance liquid chromatography/tandem mass spectrometry to the detection and quantitation of apolipoproteins in human serum | KayEtAl2007_Hs-Plasma_MRM.tsv | 
  
    | PATR00006 | FongNorris2009_Bovine-Milk | Fong and Norris 2009 transitions from bovine milk fat globule membrane. | Cow | Quantification of Milk Fat Globule Membrane Proteins Using Selected Reaction Monitoring Mass Spectrometry | FongNorris2009_Bovine-Milk_MRM.tsv | 
  
    | PATR00007 | Letarte2009_Hs-Plasma | Optimized transitions for proteins in Human plasma | Human |  | Letarte2009_Hs-Plasma_MRM.tsv | 
  
    | PATR00008 | PicottiEtAl2009_Sc-Final | Picotti et.al. 2009 yeast transitions - Final assays used in study | Yeast | High-throughput generation of selected reaction-monitoring assays for proteins and proteomes | PicottiEtAl2009_Sc-Final_MRM.tsv | 
  
    | PATR00009 | PicottiEtAl2009_Sc-KinPhos | Picotti et.al. 2009 yeast transitions - Kinases and Phosphatases | Yeast | High-throughput generation of selected reaction-monitoring assays for proteins and proteomes | PicottiEtAl2009_Sc-KinPhos_MRM.tsv | 
  
    | PATR00010 | KeshishianEtAl2009_Hs-Plasma | Keshishian et.al. 2009 transitions from Human Plasma (Supplemental Table 1, with the Q1 value for GYSI*FSYATK corrected, as per the author.) | Human | Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution | KeshishianEtAl2009_Hs-Plasma_MRM.tsv | 
  
    | PATR00011 | WhiteakerEtAl2010_Mouse-Breast | From a SISCAPA study from the Paulovich lab. | Mouse | An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers | WhiteakerEtAl2010_Mouse-Breast_MRM.tsv | 
  
    | PATR00014 | Malstrom2012_Sp | S. pyogenes proteome-wide SRM transition repository | Streptococcus | Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes | malmstroem.TraML.gz |