Protein abundance data, domains, shared domains with other proteins, protein sequence retrieval for
various strains, sequence-based physico-chemical properties, protein modification sites, and external
identifiers for the protein.
AlphaFold, developed by DeepMind, is an AI program that accurately predicts protein structures from amino acid sequences, enabling visualization of protein conformations. The predicted structures can be accessed through the Protein Data Bank (PDB) and AlphaFold Protein Structure Database.
Contains experimentally-derived protein half-life data obtained using stable isotope labeling by amino acids (SILAC) coupled with mass spectrometry. This section also contains protein abundance data for both untreated and treated cells obtained from over 20 studies. These data have been normalized and converted to a common unit of molecules per cell.
Protein Half Life
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Collection of computationally identified domains and motifs, as determined by InterProScan analysis;
includes protein coordinates for the domain, a domain Description, a Source and corresponding accession
ID, and the number of S. cerevisiae genes that share the same domain.
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Visual representation of the locations of the domains within the protein, as listed in
the Domains and Classification table. Each row displays the domain(s) derived from a
different Source, with domains color-coded according to this Source.
Scroll over a domain to view its exact coordinates and its Description.
Shared Domains
This diagram displays domains (colored squares) shared between the given protein (yellow circle)
and other proteins (gray circles); the domains are color-coded according to their source, as
displayed in the Domain Locations table, above.
Click on a gene or domain name to go to its specific page within SGD; drag any of the gene or domain objects around
within the visualization for easier viewing; click “Reset” to automatically redraw the diagram.
Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.
Protein sequence for the given gene in S288C and other strains, when available. Use the pull-down menu under "Strain" to select the sequence for a specific strain. The displayed sequence can be downloaded in FASTA format as a .txt file. Amino acids displayed in blue represent modification sites. More detailed evidence for these modification sites is presented in the Post-translational Modifications table, located just below the protein sequence.
This locus is not translated into a protein.
* Blue amino acids indicate modification sites. More information below.
Modification sites for the protein in the selected strain, based on the presence of a residue in the specific strain, as inferred from experimental evidence.
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Calculated protein properties, including amino acid composition, length, coding
region calculations, and atomic composition.
Amino Acid Composition
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.txt file using the "Download Properties" button.
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.txt file using the "Download Properties" button.
List of external identifiers for the protein from various database sources.
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