Plant RNAi Biology

PLANT BIOLOGY AND BIOTECHNOLOGY / Biotic and Abiotic Stress

Research Interests

microRNA, plant virus interactions, abiotic stress, cross-talk, plant protection

Description of Research

The Group is interested in understanding miRNA mediated gene silencing mechanisms operative in plants and apply this knowledge toward sustainable crop improvement and protection. The miRNAs are small molecules that play an important role in regulating plant growth, development and adaptation towards stresses, by switching off gene expression. This study gains importance in the era of global climate change, as crop productivity is being adversely impacted by rise in temperature, accompanied by increase in soil salinity, decline in fresh water and high incidence of virus infection.

We have explored the natural variation in miRNA expression among indigenous rice varieties and established strong correlations between specific miRNA profiles and their adaptive responses to abiotic stresses. The studies further reveal that specific miRNA regulatory nodes act as integrative hubs of environmental signals, for coordinating plant responses to diverse stresses. Several of these nodes are evolutionarily conserved across plant species and exhibit genetically determined, dynamic variations that depend on the degree, duration, and nature of stress.

We have established an excellent model for dissecting molecular interactions between viruses and their plant hosts. This work has provided valuable insights into the mechanisms by which viruses can harness innate plant defense pathways to enhance crop protection against diverse environmental challenges.

Extending our research towards translational outcomes, my team has demonstrated proof-of-concept for miRNA-mediated crop improvement. The overexpression of specific miRNAs in rice resulted in high-yielding lines with sustained performance under stress. In addition, my group has leveraged artificial miRNA approaches to engineer resistance against plant viruses, further underscoring the versatility of RNA-based strategies for enhancing crop resilience and protection. Our current efforts focus on developing and testing non-transgenic delivery approaches to facilitate safe and effective field implementation.

Representative picture showing comparison of seedling, mature plant and root of a salt-stressed miRNA-overexpressing (miR-Ox) rice plant with wild type (WT) plant.

Recent Publications

Kumar S., Prakash S., Kumari P. and Sanan-Mishra N. (2025) A robust in-vitro and ex-vitro Agrobacterium rhizogenes-mediated hairy root transformation system in mungbean for efficient visual screening of transformants using the RUBY reporter. BMC Plant Biology. 25, 724. PubMed link

Ramprosand S., Govinden-Soulange J., Ranghoo-Sanmukhiya V.M. and Sanan-Mishra N. (2024) miRNA, phytometabolites and disease: connecting the dots. Phytotherapy Research 8(9), 4570-4591 PubMed link

Goswami K.,Mittal D., Tripathi A., Gauta B., SoporyS.K. and Sanan-MishraN. (2023)miRNA regulatory networks underlying the root-shoot synergism in salt tolerant Pokkali rice. Journal of Plant Growth Regulation. 42, 6183–6201

Kumar S., Sharma N., Sopory S.K., Sanan-Mishra N. (2024) miRNAs and genes as molecular regulators of rice grain morphology and yield. Plant Physiology and Biochemistry. 207, 108363.PubMed link

Sahoo S., Kusunoki K., Goswami K., Koyama H., Sanan-Mishra N. and Panda S.K. (2023) Differential transcriptional regulation of drought stress revealed by comparative RNA-seq analysis of contrasting indica rice from North East India. Journal of Plant Growth Regulation. 42, 5780–5795 ResearchGate link

Sahu A.K. and Sanan-Mishra N. (2021) Interaction between βC1 of satellite and coat protein of Chili leaf curl virus plays a crucial role in suppression of host RNA silencing Applied Microbiology and Biotechnology. 105(21): 8329-8342 

Group Leader

Neeti Sanan-Mishra
ICGEB New Delhi, India
E-mail: [email protected], [email protected]
Tel: +91-11-26741358, ext. 280
Group Leader CV

Group Members

Ram Pada Sarkar, Field Assistant

Prakash Singh Patwal, Research Technician

Priti Kumari, Project Associate

Kavita Goswami, Research Associate

Lanvin Rochal Kepngop Kouokap, Postdoc

Tilahun Rabuma, Postdoc

Sudhir Kumar, Ph.D Student

Sanjeev Kumar, MK Bhan Fellow

Aayushi Singh Rathore, Postgraduate Fellow

Adeeb Rahman, Postgraduate Fellow

Vaishali Saxena, Postgraduate Fellow

Himanshu Nainwal, Postgraduate Fellow

Tannu Sharma, Postgraduate Fellow

Babatunde Olanrewaju Okunlola, Postgraduate Fellow