Metabolic Engineering

INDUSTRIAL BIOTECHNOLOGY  / Biofuels and Industrial Biotechnology

Research Interests

Climate Change, Sustainable Aviation Fuel (SAF), Carbon Capture and Utilization (CCU), Space Biomanufacturing, Astaxanthin, Terpenoids Drug Biosynthesis, Synthetic Biology.

Description of Research

Our Group is dedicated to using synthetic biology to genetically alter microalgae as an innovative solution to global challenges such as climate change. We have active research collaborations with several major companies, including Reliance Industries Ltd., Tata Steel, Chennai Petroleum Chemical Limited (CPCL), Aban Infrastructure Pvt Ltd., and the Indian Space Agency.

Astaxanthin Production

Astaxanthin is a powerful antioxidant, often referred to as “gold” among carotenoids due to its superior health benefits for humans. It is used in nutraceuticals, cosmetics, and animal feed. Currently, only about 5% of the world’s astaxanthin comes from natural sources. We have isolated a unique strain of microalgae, Dysmorphococcus globosus-HI, that naturally produces double the amount of astaxanthin compared to commercial strains. Using synthetic biology, we are working to enhance this production.

Sustainable Aviation Fuel (SAF)

To help reduce the aviation industry’s carbon footprint, we are developing Sustainable Aviation Fuel (SAF) from renewable sources such as algae. The European Union has mandated that airlines progressively increase their use of SAF to reach 70% by 2050. We have genetically engineered a microalgal strain, Euglena, that directly produces hydrocarbons (alkanes), which are ideal for use as drop-in jet fuel.

Carbon Capture & Utilization (CCU)

We have engineered a microalgae strain using RNA interference (RNAi) to address the toxicity of high carbon dioxide (CO2​) concentrations in industrial flue gas. This allows RNAi mutant strains to thrive in CO2 levels of above 5% to 18% or more. Such high concentrations of CO2 are lethal to most of the natural algae. As a critical safety feature, the RNAi mutant microalgae cannot survive in ambient atmospheric or aquatic conditions, preventing ecological disruption. This genetic alteration makes them highly effective for capturing and utilising industrial CO2​. The strain exhibits superior productivity, accumulating 4 to 6 times more biomass than the wild type. Furthermore, the high-CO2​ environment ensures axenic cultivation by naturally deterring grazers and microbial contaminants. The resulting biomass is a versatile feedstock for producing bio-crude oil for biofuel and biochar that serves as a biofertiliser, improves soil health, and fixes carbon.

Space Biomanufacturing

Our research investigates the integration of microalgae into bioregenerative life-support systems for long-duration space missions. Microalgae can establish a nearly closed-loop system by providing nutrient-rich food, recycling crew waste, converting exhaled carbon dioxide (CO2​), and producing oxygen. We are also exploring how spaceflight stressors, such as microgravity and cosmic radiation, might stimulate the production of valuable compounds in edible algae for potential pharmaceutical and health applications. We are now studying the effects of microgravity on three edible microalgae species. We have developed a genetically engineered microalgae with enhanced tolerance for high-CO2​ environments, which can be tested for survivability in a simulated Martian atmosphere containing 95% CO2​.

Growth wildtype algae vs RNAi mutant algae in 18% CO2. The 12-18% CO₂ concentration in industrial flue gas is toxic to natural algae. Therefore, we have developed a mutant microalga using RNAi technology that thrives in these conditions. Our strain continuously sequesters carbon from simulated flue gas with 18% CO₂ and accumulates 4-6 times more biomass than natural varieties. This mutant is also environmentally safe, as it requires CO₂ levels of 5% or higher to survive and cannot grow in natural atmospheric or aquatic environments. Furthermore, the high-CO₂ medium eliminates microbial grazers, ensuring a pure (axenic) culture ideal for various applications.
Growth wildtype algae vs RNAi mutant algae in 18% CO2. The 12-18% CO₂ concentration in industrial flue gas is toxic to natural algae. Therefore, we have developed a mutant microalga using RNAi technology that thrives in these conditions. Our strain continuously sequesters carbon from simulated flue gas with 18% CO₂ and accumulates 4-6 times more biomass than natural varieties. This mutant is also environmentally safe, as it requires CO₂ levels of 5% or higher to survive and cannot grow in natural atmospheric or aquatic environments. Furthermore, the high-CO₂ medium eliminates microbial grazers, ensuring a pure (axenic) culture that is ideal for various applications.

Recent Publications

Arora, N., Tripathi, S., Philippidis, G.P., Kumar, S. 2025. Thriving in extremes: harnessing the potential of pH-resilient algal strains for enhanced productivity and stability. Environmental Science: Advances. https://doi.org/10.1039/D4VA00247D

Kashyap, S., Das, N., Kumar, M., Mishra, S., Kumar, S., Nayak, M. 2025. Poultry litter extract as solid waste supplement for enhanced microalgal biomass production and wastewater treatment. Environmental Science and Pollution Research (ESPR).  https://doi.org/10.1007/s11356-025-35900-y

Singh, A.K., Nawkarkar, P., Bhatnagar, V.S., Tripathi, Mock, T., Kumar, S. 2024. Assessing the potential of a genetically modified Parachlorella kessleri-I with low CO2 inducible proteins for enhanced biomass and biofuel productivity. Journal of Environmental Chemical Engineering. https://doi.org/10.1016/j.jece.2024.113795

Sharma, A., Chhabra, M., Kumar, S. 2024. Performance evaluation of genetically modified microalgae in photosynthetic microbial fuel cells for carotenoids and power generation. Journal of Environmental Chemical Engineering. https://doi.org/10.1016/j.jece.2024.112751

Sharma, A., Nawkarkar, P., Kapase, V.U., Chhabra, M., Kumar, S. 2024. Engineering of ketocarotenoid biosynthetic pathway in Chlamydomonas reinhardtii through exogenous gene expression. Systems Microbiology and Biomanufacturing https://doi.org/10.1007/s43393-024-00240-4

Nawkarkar, P.,  Kapase, V.U., Chaudhary, S., Kajla, S., Kumar, S. 2023. Heterogeneous diacylglycerol acyltransferase expression enhances lipids and PUFA in Chlorella species. GCB Bioenergy 15: 1240-1254 https://doi.org/10.1111/gcbb.13089

Patents

Kang. B., McMahan. C.M., Whalen. M.C., Dong, N., Kumar, S. 2016. Engineering rubber production in plants. US 20140325699, WO/2014/152747.

Kumar S and Singh AK. Method of Utilization of Carbon Concentration Mechanism in Micro-Algal Species to Increase Production of Lipids and Obtain Bio-Fuel. Indian Patent Application No: 2856/DEL/2015.

Group Leader

Shashi Kumar Rhode
ICGEB New Delhi, India
E-mail: [email protected] 
Tel: +91-11-26741358/26742357 ext 475
Group Leader CV

Group Members

Dr. Prachi Nawkarkar: BioCare Women Scientist supported by DBT

Dr. Vikas Kapase: Research Associate-III in DBT-supported SAF project

Ms. Umme Yasmeen: ICGEB PhD Scholar

Ms. Shivani Tyagi: ICGEB PhD Scholar

Mr. Vasanthakumar S: ICGEB PhD Scholar

Ms. Krati Rajput: ICGEB PhD Scholar

Mr. Arush Singh: ICGEB PhD Scholar

Ms. Antima Sarswat: PhD Scholar at ICGEB under the i3C BRIC-RCB PhD Programme.

Mr. Sujal Aganihotri: Technical Assistant in the DBT-supported project.

Mr. Chandra Singha: Senior Research Fellow