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RNA viruses promote activation of the NLRP3 inflammasome through a RIP1-RIP3-DRP1 signaling pathway

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Abstract

The NLRP3 inflammasome functions as a crucial component of the innate immune system in recognizing viral infection, but the mechanism by which viruses activate this inflammasome remains unclear. Here we found that inhibition of the serine-threonine kinases RIP1 (RIPK1) or RIP3 (RIPK3) suppressed RNA virus–induced activation of the NLRP3 inflammasome. Infection with an RNA virus initiated assembly of the RIP1-RIP3 complex, which promoted activation of the GTPase DRP1 and its translocation to mitochondria to drive mitochondrial damage and activation of the NLRP3 inflammasome. Notably, the RIP1-RIP3 complex drove the NLRP3 inflammasome independently of MLKL, an essential downstream effector of RIP1-RIP3–dependent necrosis. Together our results reveal a specific role for the RIP1-RIP3-DRP1 pathway in RNA virus–induced activation of the NLRP3 inflammasome and establish a direct link between inflammation and cell-death signaling pathways.

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Figure 1: Role of RIP3 in RNA virus–induced activation of the NLRP3 inflammasome.
Figure 2: Role of RIP3 in virus-induced activation of the NLRP3 inflammasome in vivo.
Figure 3: RNA virus–induced activation of the NLRP3 inflammasome depends on RIP1 but not on MLKL.
Figure 4: The RIP1-RIP3 complex is required for mitochondrial damage and the translocation of ASC to mitochondria during infection with an RNA virus.
Figure 5: The RIP1-RIP3 complex promotes RNA virus–induced activation of DRP1.
Figure 6: Role of DRP1 in RNA virus–induced mitochondrial damage and activation of the NLRP3 inflammasome.
Figure 7: dsRNA activates the NLRP3 inflammasome in a RIP1–, RIP3– and DRP1-dependent manner.

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Acknowledgements

We thank J. Tschopp (University of Lausanne) for Nlrp3−/− mice; S. Akira (Osaka University) for Rig-I−/− mice; V.M. Dixit (Genentech) for Rip3−/− mice; M. Colonna (Washington University) for Mda5−/− mice; Z. Jiang (Peking University) for Sendai virus and VSV (Indiana strain); and Z. Song (Wuhan University) for the DRP1 construct. Supported by the National Basic Research Program of China (2014CB910800), the National Natural Science Foundation of China (81330078 and 81222040), the Doctoral Fund of the Ministry of Education of China (20123402120001, 20123402110010), the One Hundred Person Project (R.Z.) and the Fundamental Research Funds for the Central Universities (R.Z. and W.J.).

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X.W., W.J., Y.Y. and T.G. performed the experiments; W.J., J.H., Z.T. and R.Z. designed the research; X.W., W.J., Z.T. and R.Z. wrote the manuscript; and R.Z. and Z.T. supervised the project.

Corresponding authors

Correspondence to Zhigang Tian or Rongbin Zhou.

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The authors declare no competing financial interests.

Integrated supplementary information

Supplementary Figure 1 Role of RIP1-RIP3 and PGAM5 in RNA virus–induced inflammasome activation.

(a) LDH release from LPS-primed BMDMs from wild-type mice (WT), Rip3-/-or Nlrp3-/-mice infected with VSV for 6 hours or stimulated with nigericin for 30 min. (b) qPCR analysis of Ifn-β expression in non-primed BMDMs from WT, Rip3-/- or Nlrp3-/- mice infected with VSV as indicated doses for 6 hours. (c) Immunoblot analysis of RIP1 expression in BMDMs transfected with siRNA against Rip1 for 48 hours. (d) Immunoblot analysis of pro-IL-1β or NLRP3 expression in BMDMs transfected with siRNA against Rip1 and stimulated with Pam3CSK4 for 6 hours. (e) Immunoblot analysis of PGAM5 in THP-1 cells stably expressing shRNA against PGAM5. (f, g) IL-1β secretion from THP-1 cells stably expressing shRNA against PGAM5 infected with VSV for 6 hours (f), or stimulated with MSU for 4 hours or nigericin for 30 min (g). (h) Confocal microscopy analysis in LPS-primed BMDMs from Rip3+/+ or Rip3-/-mice infected with VSV for 2 hours or stimulated with nigericin for 30 min, and then stained with MitoSOX and DAPI. Scale bar, 50 μm. (i) Confocal microscopy analysis in LPS-primed BMDMs pretreated with Nec-1s (30 μM) for 1 hour and then infected with VSV for 2 hours or stimulated with nigericin for 30 min. After treatment, the cells were stained with MitoSOX and DAPI. Scale bar, 50 μm. NS, P > 0.05 (two-way ANOVA (a,b,f,g). Data are representative of at three independent experiments (c-e, h, i) or are from three independent experiments (with biological duplicates in each) (a, b, f, g; mean and s.e.m.).

Supplementary Figure 2 RIP3 is required for VSV-induced translocation of ASC to mitochondria.

Confocal microscopy analysis in LPS-primed BMDMs from Rip3+/+ or Rip3-/- mice infected with VSV for 2 hours and then stained with anti-ASC antibody, Mitotracker red and DAPI. Data are representative of at three independent experiments.

Supplementary Figure 3 RIP3 is required for VSV-induced translocation of DRP1 to mitochondria.

Confocal microscopy analysis in LPS-primed BMDMs from Rip3+/+ or Rip3-/- mice infected with VSV for 2 hours or stimulated with nigericin for 30 min, and then stained with anti-DRP1 antibody, Mitotracker and DAPI. Scale bar, 20 μm. Data are representative of at three independent experiments.

Supplementary Figure 4 RIP1 is required for VSV-induced translocation of DRP1 to mitochondria.

Confocal microscopy analysis in LPS-primed BMDMs pretreated with Nec-1s (30 μM) for 1 hour and then were infected with VSV for 2 hours or stimulated with nigericin for 30 min. After treatment, the cells were stained with anti-DRP1 antibody, Mitotracker and DAPI. Scale bar, 20 μm. Data are representative of at three independent experiments

Supplementary Figure 5 MLKL is not required for VSV-induced translocation of DRP1 to mitochondria.

Confocal microscopy analysis in LPS-primed BMDMs from Mlkl+/+ or Mlkl-/- mice were infected with VSV for 2 hours or stimulated with nigericin for 30 min, and then stained with anti-DRP1 antibody and Mitotracker. Scale bar, 20 μm. Data are representative of at three independent experiments.

Supplementary Figure 6 Role of DRP1 or FIS1 in mitochondrial damage and inflammasome activation.

(a) Immunoblot analysis of BMDMs transfected with siRNA against Drp1 for 48 hours. (b) Confocal microscopy analysis of LPS-primed BMDMs transfected with siRNA against Drp1 and then infected with VSV for 2 hours or stimulated with nigericin for 30 min and followed by staining with MitoSOX and DAPI. Scale bar, 50 μm. (c) IL-1β secretion from LPS-primed BMDMs transfected with siRNA against Drp1 and then stimulated with MSU, poly (A:T) for 4 hours or ATP, nigericin for 30 min. (d) Immunoblot analysis of BMDMs transfected with siRNA against Fis1 for 48 hours. (e, f) Confocal microscopy analysis of LPS-primed BMDMs transfected with siRNA against Fis1 and infected with VSV for 2 hours or stimulated with nigericin for 30 min and followed by staining with Mitotracker red. Representative pictures (e) or qualification (f) was shown. Scale bar, 50 μm. * P < 0.001, NS P > 0.05. Data are representative of at three independent experiments (a, b, d, e) or are from three independent experiments (with biological duplicates in each) (c, f; mean and s.e.m.).

Supplementary Figure 7 Role of RIP3 and DRP1 in CCCP-induced mitochondrial fission and IL-1β production.

(a) Immunoblot analysis of DRP1 phosphorylation in LPS-primed BMDMs stimulated with CCCP (10 μM) or infected with VSV for 1 hours. (b) IL-1β secretion from LPS-primed BMDMs from Rip3+/+ or Rip3-/-mice were stimulated with CCCP for 5 hours. (c) Confocal microscopy analysis of LPS-primed BMDMs from Rip3+/+ or Rip3-/- mice stimulated with CCCP (10 μM) for 2 hours, and then stained with anti-DRP1 antibody and Mitotracker. Scale bar, 25 μm. (d) IL-1β secretion from LPS-primed BMDMs transfected with siRNA against Drp1 and then stimulated with CCCP (10 μM) for 5 hours. (e, f) Confocal microscopy analysis of LPS-primed BMDMs transfected with siRNA against Drp1 and stimulated with CCCP (10 μM) for 2 hours, and followed by staining with Mitotracker red and DAPI. Representative pictures (e) or qualification (f) was shown. Scale bar, 25 μm. NS P > 0.05, * P<0.01 (two-way ANOVA), * P<0.001 (two-way ANOVA). Data are representative of at three independent experiments (a, c, e) or are from three independent experiments (with biological duplicates in each) (b, d, f; mean and s.e.m.).

Supplementary Figure 8 Role of RNA sensors in VSV- or dsRNA-induced activation of the NLRP3 inflammasome.

(a, b) IL-1β secretion from LPS-primed BMDMs from wild-type mice, Rig-I-/- or Mda5-/- mice infected with VSV (a) or transfected with poly (I:C) (b) for 6 hours. (c) qPCR analysis of Ifn-β expression in non-primed BMDMs from wild-type mice, Rig-I-/- or Mda5-/- mice infected with VSV for 6 hours. (d) Immunoblot analysis of THP-1 cells stably expressing shRNA against Rip1 or DHX33. (e) IL-1β secretion from THP-1 cells stably expressing shRNA against Rip1 or DHX33 infected with VSV for 6 hours or stimulated with nigericin for 30 min. (f, g) IL-1β secretion from Pam3CSK4-primed BMDMs from Tlr3+/+ or Tlr3-/-mice infected with VSV (f) or stimulated with poly (I:C) transfection (g) for 6 hours. NS P > 0.05 (unpaired t-test (a, b, c, g), NS P > 0.05 (two-way ANOVA (f)), * P < 0.01 (two-way ANOVA (e)), ** P < 0.001 (two-way ANOVA (c)). Data are representative of at three independent experiments (d) or are from three independent experiments (with biological duplicates in each) (a-c, e-g; mean and s.e.m.).

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Wang, X., Jiang, W., Yan, Y. et al. RNA viruses promote activation of the NLRP3 inflammasome through a RIP1-RIP3-DRP1 signaling pathway. Nat Immunol 15, 1126–1133 (2014). https://doi.org/10.1038/ni.3015

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