Articles

NUBO: A Transparent Python Package for Bayesian Optimization

Mike Diessner, Kevin J. Wilson, Richard D. Whalley
Vol. 114, Issue 1
Paper Python package (nubopy) Python replication code Python replication notebook Supplementary tables

mdendro: An R Package for Extended Agglomerative Hierarchical Clustering

Alberto Fernández, Sergio Gómez
Vol. 114, Issue 2
Paper R package (mdendro) Replication materials

ebnm: An R Package for Solving the Empirical Bayes Normal Means Problem Using a Variety of Prior Families

Jason Willwerscheid, Peter Carbonetto, Matthew Stephens
Vol. 114, Issue 3
Paper R package (ebnm) Replication materials

Exploring Data Subsets with vtree

Nick Barrowman, Richard J. Webster
Vol. 114, Issue 4
Paper R package (vtree) R replication code Supplementary data (7z compressed CSV)

hmmTMB: Hidden Markov Models with Flexible Covariate Effects in R

Théo Michelot
Vol. 114, Issue 5
Paper R package (hmmTMB) Replication materials

hibayes: An R Package to Fit Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies

Lilin Yin, Haohao Zhang, Xinyun Li, Shuhong Zhao, Xiaolei Liu
Vol. 114, Issue 6
Paper R package (hibayes) R replication code

TSCI: Two Stage Curvature Identification for Causal Inference with Invalid Instruments in R

David Carl, Corinne Emmenegger, Peter Bühlmann, Zijian Guo
Vol. 114, Issue 7
Paper R package (TSCI) R replication code

Quantile Regression under Limited Dependent Variable in Stata

Javier Alejo, Gabriel Montes-Rojas
Vol. 114, Issue 8
Paper Stata package (ldvqreg) Replication materials

GLMcat: An R Package for Generalized Linear Models for Categorical Responses

Lorena León, Jean Peyhardi, Catherine Trottier
Vol. 114, Issue 9
Paper R package (GLMcat) R replication code

Optimum Allocation for Adaptive Multi-Wave Sampling in R: The R Package optimall

Jasper B. Yang, Thomas Lumley, Bryan E. Shepherd, Pamela A. Shaw
Vol. 114, Issue 10
Paper R package (optimall) R replication code

Mixed-Effects Additive Transformation Models with the R Package tramME

Bálint Tamási
Vol. 114, Issue 11
Paper R package (tramME) Replication materials

Benchpress: A Versatile Platform for Structure Learning in Causal and Probabilistic Graphical Models

Felix L. Rios, Giusi Moffa, Jack Kuipers
Vol. 114, Issue 12
Paper Source and replication code (Benchpress)