Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
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Aug 23, 2024 - Python
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sars-cov-2
Here are 592 public repositories matching this topic...
🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
awesome corona awesome-list epidemiology 2019-ncov 2019ncov coronavirus coronavirus-info covid-19 covid19 sars-cov-2 covid19-data awesome-corona awesome-coronavirus
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May 2, 2024 - TypeScript
Models of COVID-19 outbreak trajectories and hospital demand
open-source science data opensource research simulation model population hospital modelling outbreak ventilator ncov coronavirus covid-19 covid sars-cov-2 neherlab
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Feb 15, 2022 - JavaScript
COVID-Net Open Source Initiative
chest-radiography coronavirus covid-19 sars-cov-2 coronavirus-dataset coronavirus-detect covid-net covidx-dataset
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Feb 16, 2023 - Jupyter Notebook
Folding@home COVID-19 efforts
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Oct 27, 2020 - Python
🫁 The world's first open-source ventilator tested on human patients. Mass-producible at a low cost (~2000€).
electronics cad medical fusion-360 nucleo-board coronavirus covid-19 covid sars-cov-2 ards covid-respirator makair-respirators
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Aug 18, 2024
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
epidemiology epidemics epidemiology-analysis epidemic-model epidemic-simulations coronavirus covid-19 covid sars-cov-2
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Mar 9, 2023 - Python
query stats of infected coronavirus cases
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Jun 10, 2021 - R
Julia and Python complex system applications in ecology, epidemiology, sociology, economics & finance; network science models including Bianconi-Barabási, Barabási-Albert, Watts-Strogatz, Waxman Model & Erdős-Rényi; graph theory algorithms involving Gillespie, Bron Kerbosch, Ramsey, Bellman Ford, A*, Kruskal, Borůvka, Prim, Dijkstra, DSatur, Ran…
graph-theory agent-based-modeling complex-systems minimum-spanning-trees spatial-models maximal-cliques graph-coloring random-graph complex-network minimum-spanning-tree agent-based-simulation sir-model dynamic-network barabasi-albert watts-strogatz dynamic-system epidemic-model compartmental-model sars-cov-2 bianconi-barabasi
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Apr 29, 2022 - Jupyter Notebook
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
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May 20, 2025 - Python
Ultra-deep search for novel viruses
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Mar 29, 2023 - Jupyter Notebook
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
science research virus sequencing next-generation-sequencing dna rna influenza sequences strain nextstrain ncov coronavirus covid-19 covid covid19 sars-cov-2 neherlab clades clade
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May 20, 2025 - Rust
A global collection of Open Source projects during COVID-19
open-source world japan china korea iran italy mainland-china wuhan 2019-ncov ncov coronavirus covid-19 sars-cov-2 open-source-wuhan open-source-covid awesome-coronavirus awesome-covid-19
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May 3, 2023 - Python
Unified COVID-19 Dataset
machine-learning global-health epidemiology infectious-diseases pandemic hydrometeorology coronavirus covid-19 sars-cov-2
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Jun 11, 2023 - R
PyRoss: inference, forecasts, and optimised control of epidemiological models in Python. github.com/rajeshrinet/pyross
epidemiological-predictions infectious-disease-models epidemic-simulations coronavirus covid-19 sars-cov-2 compartment-models epidemiological-models pyross
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Aug 31, 2024 - Jupyter Notebook
Die COVID-19-Impfung kann einen Wendepunkt in der Kontrolle der COVID-19-Pandemie darstellen und erfährt daher hohes Maß an öffentlicher Aufmerksamkeit. Einführung und Umsetzung der COVID-19-Impfung gehen mit besonderen Herausforderungen einher, die bei der Impfdatenerfassung zu berücksichtigen sind. In diesem Kontext ist es Ziel des Projekts 'D...
germany open-data deutschland vaccination covid-19 sars-cov-2 rki vakzination impfschutz-deckungsgrad massenimpfung vaccination-coverage mass-vaccination offene-daten
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Apr 16, 2025
Assembly and intrahost/low-frequency variant calling for viral samples
workflow nanopore virus pipeline nextflow assembly metagenomics variant-calling illumina oxford-nanopore amplicon viral ont nf-core long-read-sequencing artic covid-19 covid19 sars-cov-2
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May 15, 2025 - Nextflow
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
bioinformatics snakemake virus genomics ngs sequencing conda bioinformatics-pipeline hiv sars-cov-2 sarscov2 biohackeu20 biohackcovid20 biohackeu21 biohackeu22
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May 8, 2025 - Jupyter Notebook
Ultrafast Sample Placement on Existing Trees
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May 7, 2025 - C++
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