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Capture <code>.nf-core.yml</code> errors and give a useful message

bugSomething isn't workingSomething isn't working

Status: Open.

#3573 In nf-core/tools;

· mirpedrol opened on May 15, 2025

nf-core-bot to update the pipeline snapshots form a comment

enhancement

Status: Open.

#3572 In nf-core/tools;

· mirpedrol opened on May 15, 2025

CONTRIBUTING.md does not exist

bugSomething isn't workingSomething isn't working

Status: Open.

#3571 In nf-core/tools;

· TimD1 opened on May 14, 2025

Autoformatting of R scripts

linting

Status: Open.

#3565 In nf-core/tools;

· grst opened on May 13, 2025

Automatically update <code>Dependencies</code> section in Changelog

automation

enhancement

Status: Open.

Enhancement

#3560 In nf-core/tools;

· famosab opened on May 6, 2025

Inconsistent number of containers with <code>pipelines download</code> subcommand

bugSomething isn't workingSomething isn't working

Status: Open.

#3551 In nf-core/tools;

· ypriverol opened on Apr 29, 2025

Linting of patched module fails

bugSomething isn't workingSomething isn't working

linting

Status: Open.

#3540 In nf-core/tools;

· mashehu opened on Apr 17, 2025

Rename arm profile

Status: Open.

Enhancement

#3536 In nf-core/tools;

· edmundmiller opened on Apr 11, 2025

manual nf-core pipelines sync deletes my pixi environment

bugSomething isn't workingSomething isn't working

Status: Open.

#3534 In nf-core/tools;

· mahesh-panchal opened on Apr 10, 2025

Linting incorrectly parses the output path if it has options (like arity)

bugSomething isn't workingSomething isn't working

Status: Open.

#3530 In nf-core/tools;

· Gullumluvl opened on Apr 3, 2025

'modules lint' and 'subworkflow lint' should also ignore files from .gitignore

linting

Status: Open.

#3529 In nf-core/tools;

· Gullumluvl opened on Apr 3, 2025

 ·  

3.4.0

Installing nf-core subworkflows causes error when subworkflow from other organization is present in modules.json

bugSomething isn't workingSomething isn't working

Status: Open.

#3528 In nf-core/tools;

· thomas-tams opened on Apr 3, 2025