Search results

.command.run permission denied in 3.16.1, 3.17.0, 3.18.0

bugSomething isn't workingSomething isn't working

Status: Open.

#1554 In nf-core/rnaseq;

· givtrah opened on May 13, 2025

<code>params.skip_alignment</code> error when running nf-core/rnaseq 3.18.0 locally

bugSomething isn't workingSomething isn't working

Status: Open.

#1552 In nf-core/rnaseq;

· ZCJ0422 opened on May 7, 2025

It is unclear why RSEM index is created when using <code>--save_reference</code>

bugSomething isn't workingSomething isn't working

Status: Open.

#1547 In nf-core/rnaseq;

· SuhasSrinivasan opened on Apr 23, 2025

Salmon index is not stored when using <code>--save_reference</code>

bugSomething isn't workingSomething isn't working

Status: Open.

#1546 In nf-core/rnaseq;

· SuhasSrinivasan opened on Apr 23, 2025

<code>--clip3pAdapterMMp</code> has to contain 2 values to match the number of mates

bugSomething isn't workingSomething isn't working

Status: Open.

#1544 In nf-core/rnaseq;

· SuhasSrinivasan opened on Apr 21, 2025

<code>--clip3pAdapterSeq</code> has to contain 2 values to match the number of mates

bugSomething isn't workingSomething isn't working

Status: Open.

#1543 In nf-core/rnaseq;

· SuhasSrinivasan opened on Apr 21, 2025

nf-core rnaseq pipeline - determination of the correct strandedness for RNASeq libraries

Status: Open.

#1539 In nf-core/rnaseq;

· pnatarajan9 opened on Apr 14, 2025

unable to override of custom.config

bugSomething isn't workingSomething isn't working

Status: Open.

#1538 In nf-core/rnaseq;

· SunSun1324 opened on Apr 12, 2025

PROCESS terminated for an unknown reason -- Likely it has been terminated by the external system

bugSomething isn't workingSomething isn't working

Status: Open.

#1535 In nf-core/rnaseq;

· Jacopot12 opened on Apr 8, 2025

Is there an way to retrieve a list of download link for all singularity images required, by which I can manually download these images easier.

enhancement

Status: Open.

#1532 In nf-core/rnaseq;

· meng-hhh opened on Mar 27, 2025

Update to MultiQC 1.27.1

bugSomething isn't workingSomething isn't working

Status: Open.

#1527 In nf-core/rnaseq;

· c-mertes opened on Mar 26, 2025

 ·  

3.19.0

Salmon quantification output is missing genes when using gff3 annotation

bugSomething isn't workingSomething isn't working

Status: Open.

#1524 In nf-core/rnaseq;

· RaverJay opened on Mar 24, 2025