Search results

PARABRICKS_FQ2BAMMETH fails with CPU OOM

bugSomething isn't workingSomething isn't working

Status: Open.

#528 In nf-core/methylseq;

· GallVp opened on May 15, 2025

Running in <code>-stub</code> mode fails for BISMARK_SUMMARY

bugSomething isn't workingSomething isn't working

Status: Open.

#527 In nf-core/methylseq;

· bounlu opened on May 9, 2025

Pixel distance in Picard mark duplicates

bugSomething isn't workingSomething isn't working

Status: Open.

#526 In nf-core/methylseq;

· trombitomi opened on May 6, 2025

Remove <code>--use_gpu</code> parameter

enhancementNew feature or requestNew feature or request

Status: Open.

#520 In nf-core/methylseq;

· GallVp opened on Apr 15, 2025

JSON schema: Methylseq

Status: Open.

#513 In nf-core/methylseq;

· jen-reeve opened on Mar 25, 2025

<code>--targeted</code> analysis

enhancementNew feature or requestNew feature or request

WIPWork in progressWork in progress

Status: Open.

#511 In nf-core/methylseq;

· dcarrillox opened on Mar 24, 2025

Help with Sample Sheet Preparation for Methyl-seq (S4 Illumina EM-seq)

enhancementNew feature or requestNew feature or request

Status: Open.

#510 In nf-core/methylseq;

· CHOWDHURY098 opened on Mar 19, 2025

bismark align fails with "java.net.SocketTimeoutException: Read timed out"

bugSomething isn't workingSomething isn't working

Status: Open.

#507 In nf-core/methylseq;

· trum994 opened on Feb 7, 2025

fix <code>bismark_hisat</code> <code>test_full</code> run

bugSomething isn't workingSomething isn't working

Status: Open.

#500 In nf-core/methylseq;

· sateeshperi opened on Dec 18, 2024

add <code>comprehensive</code> param tests

Status: Open.

#498 In nf-core/methylseq;

· sateeshperi opened on Dec 17, 2024

 ·  

3.1.0

Bismark soft clip --local_alignment True keeps L,value,value

bugSomething isn't workingSomething isn't working

Status: Open.

#472 In nf-core/methylseq;

· ioannagare opened on Nov 27, 2024

Update multiqc output with bwameth metrics

enhancementNew feature or requestNew feature or request

Status: Open.

#463 In nf-core/methylseq;

· sateeshperi opened on Nov 22, 2024