Search results

Standardise pre-processing parameter flags between long and short reads

enhancementNew feature or requestNew feature or request

Status: Open.

#806 In nf-core/mag;

· prototaxites opened on May 14, 2025

Add dedicated flag for poly-G read/tail removal from Illumina 2-colour chemistry

enhancementNew feature or requestNew feature or request

Status: Open.

#803 In nf-core/mag;

· jfy133 opened on May 13, 2025

Add fairy for fast co-coverage estimation

enhancementNew feature or requestNew feature or request

Status: Open.

#796 In nf-core/mag;

· prototaxites opened on May 8, 2025

QUAST_BINS can be very slow / Reconfigure BIN_SUMMARY table

enhancementNew feature or requestNew feature or request

Status: Open.

#789 In nf-core/mag;

· prototaxites opened on Apr 9, 2025

Process FAIDX removable in subworkflow ANCIENT_DNA_ASSEMBLY_VALIDATION (?)

bugSomething isn't workingSomething isn't working

Status: Open.

#772 In nf-core/mag;

· simoxb opened on Mar 12, 2025

Fix version reporting for all subworkflows

bugSomething isn't workingSomething isn't working

good first issueGood for newcomersGood for newcomers

low-priority

Status: Open.

#761 In nf-core/mag;

· jfy133 opened on Feb 5, 2025

Remove unusued local modules

enhancementNew feature or requestNew feature or request

Status: Open.

#757 In nf-core/mag;

· jfy133 opened on Jan 30, 2025

Replace QUAST custom modules with official nf-core ones

enhancementNew feature or requestNew feature or request

Status: Open.

#748 In nf-core/mag;

· amizeranschi opened on Jan 20, 2025

Compress FASTA files with contigs and scaffolds using bgzip instead of gzip, to enable file indexing

enhancementNew feature or requestNew feature or request

Status: Open.

#746 In nf-core/mag;

· amizeranschi opened on Jan 19, 2025

Add new features and Improvement to nf-core/mag: Trimmomatic, contigs param for binning, new concoct default params

enhancementNew feature or requestNew feature or request

Status: Open.

#744 In nf-core/mag;

· Pranjal-Bioinfo opened on Jan 16, 2025

Ensure unique contig names across assemblies, for chaining pipeline with magmap

enhancementNew feature or requestNew feature or request

Status: Open.

#742 In nf-core/mag;

· amizeranschi opened on Jan 6, 2025

Update multiqc config to support new modules

good first issueGood for newcomersGood for newcomers

Status: Open.

#739 In nf-core/mag;

· jfy133 opened on Dec 22, 2024