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fasterq-dump error code 3 associated with directory name

Status: Open.

#1110 In ncbi/sra-tools;

· NateyJay opened on Oct 22, 2025

Is there a way to retrieve STAT results (Sequence Taxonomic Analysis Tool) using sra-tool ?

Status: Open.

#1109 In ncbi/sra-tools;

· JustineCharon opened on Oct 21, 2025

How are temporary files handled when running multiple prefetch jobs in same directory

Status: Open.

#1107 In ncbi/sra-tools;

· t-vane opened on Oct 9, 2025

Does latf-load not support single-cell RNA-seq data, including index files?

Status: Open.

#1048 In ncbi/sra-tools;

· chunryongoh opened on May 12, 2025

/etc/profile.d/sra-tools.csh broken

Status: Open.

#1011 In ncbi/sra-tools;

· outpaddling opened on Feb 14, 2025

Dump fastq to sra-lite

Status: Open.

#995 In ncbi/sra-tools;

· ledwmp opened on Dec 12, 2024

Feature suggestion: option in fasterq-dump to output the FASTQ files already gzipped

Status: Open.

#956 In ncbi/sra-tools;

· fantauzzi opened on Aug 14, 2024

vdb-config: use AWS IAM role instead of credentials file

Status: Open.

#945 In ncbi/sra-tools;

· peter-sandor-1992 opened on Jul 4, 2024

vdb-config

Status: Open.

#936 In ncbi/sra-tools;

· anjilsri opened on May 8, 2024

consider adding a flake.nix

Status: Open.

#854 In ncbi/sra-tools;

· MatrixManAtYrService opened on Sep 30, 2023

default parameter values tinhelp output for fasterq-dump

Status: Open.

#840 In ncbi/sra-tools;

· bwlang opened on Aug 17, 2023

Feature request: increase speed of C++ API for streaming reads from alignment-based SRA records

Status: Open.

#794 In ncbi/sra-tools;

· jgans opened on Mar 21, 2023