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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 662 381

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 350 87

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 320 85

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 256 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 150 95

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 121 22

Repositories

Showing 10 of 195 repositories
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 57 Apache-2.0 10 25 0 Updated May 17, 2025
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 8 MIT 0 30 5 Updated May 16, 2025
  • cryoSBI Public
    flatironinstitute/cryoSBI’s past year of commit activity
    Python 11 1 15 2 Updated May 15, 2025
  • sciware Public

    Learning materials for scientific software development

    flatironinstitute/sciware’s past year of commit activity
    HTML 84 38 2 0 Updated May 15, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 662 GPL-2.0 381 85 (1 issue needs help) 12 Updated May 15, 2025
  • sciware-intern-mentors Public

    Guidance from sciware for summer intern mentors at Flatiron

    flatironinstitute/sciware-intern-mentors’s past year of commit activity
    2 Apache-2.0 0 2 0 Updated May 15, 2025
  • CryoLike Public
    flatironinstitute/CryoLike’s past year of commit activity
    Python 8 MIT 6 8 9 Updated May 15, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 97 MIT 10 114 (3 issues need help) 2 Updated May 14, 2025
  • cppdlr Public

    Discrete Lehmann representation of imaginary time Green's functions

    flatironinstitute/cppdlr’s past year of commit activity
    C++ 11 Apache-2.0 6 2 0 Updated May 13, 2025
  • sparse_dot Public

    Python wrapper for Intel Math Kernel Library (MKL) matrix multiplication

    flatironinstitute/sparse_dot’s past year of commit activity
    Python 84 MIT 11 3 0 Updated May 13, 2025
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