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UniProt XML module code contribution

Status: Open.

#1112 In biojava/biojava;

· heuermh opened on Mar 19, 2025

Unable to find entrez (e -utilities) NCBI

Status: Open.

#1090 In biojava/biojava;

· kshitijgarg2609 opened on Apr 12, 2024

Quality: Sonar S1155 "Collection.isEmpty()" should be used to test for emptiness

Status: Open.

#1079 In biojava/biojava;

· jlerbsc opened on Jan 16, 2024

Quality: Sonar RSPEC-1940 "Boolean checks should not be inverted"

Status: Open.

#1074 In biojava/biojava;

· jlerbsc opened on Dec 12, 2023

Suggestion: Sonar S2129 Constructors should not be used to instantiate "String", "BigInteger", "BigDecimal" and primitive-wrapper classes

Status: Open.

#1066 In biojava/biojava;

· jlerbsc opened on Jun 25, 2023

Suggestion: Sonar S1130 "throws" declarations should not be superfluous

Status: Open.

#1061 In biojava/biojava;

· jlerbsc opened on May 10, 2023

Test Smell: it is not a good test practice to use the loop in the test

Status: Open.

#1038 In biojava/biojava;

· TestSmell opened on Aug 17, 2022

NCBIQBlastService.sendAlignmentRequest | Always throws ArrayIndexOutOfBoundsException

Status: Open.

#1033 In biojava/biojava;

· FC123321 opened on Jun 30, 2022

Harmonize Profile and LightweightProfile

Status: Open.

#1018 In biojava/biojava;

· sbliven opened on Jan 27, 2022

 ·  

6.1.0

o.b.n.core.sequence.CDSSequence doesn't reverse-complement correctly

bugBugs and bugfixesBugs and bugfixes

Status: Open.

#1016 In biojava/biojava;

· richarda23 opened on Jan 4, 2022

Maintenance of ontology module

Status: Open.

#1013 In biojava/biojava;

· richarda23 opened on Jan 4, 2022

Add standard documented way how to reduce structure to a subset of chains

Status: Open.

#1003 In biojava/biojava;

· rdk opened on Dec 9, 2021