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Commits on Mar 14, 2015

• updated sickle.xml to work with new galaxy

  najoshi

  committed
  f3d6ae3

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Commits on Feb 25, 2015

• fixed seg fault bug from blank lines in fastq record

  najoshi

  committed
  84642cb

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Commits on Feb 24, 2015

• fixed bug where optional arguments should have been required arguments

  najoshi

  committed
  972a0e3

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• added help text to clarify long-options usage

  najoshi

  committed
  e8e1496

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Commits on Jul 26, 2014

• added more info to output stats

  najoshi

  committed
  7667f14

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Commits on Jul 24, 2014

• added more files to dist in Makefile

  najoshi

  committed
  822f169

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Commits on Jul 23, 2014

• fixed bug where disabling 5-prime trimming discarded all reads

  najoshi

  committed
  8bec856

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Commits on Jul 21, 2014

• changed truncate long option name

  najoshi

  committed
  a9acb65

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Commits on Jul 20, 2014

• fixed bug in interleaved output

  najoshi

  committed
  2f9eba0

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• made help text more precise

  najoshi

  committed
  9448a81

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Commits on Jul 19, 2014

• added help text to XML file

  najoshi

  committed
  def2a3b

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• rearranged the README text a bit

  najoshi

  committed
  92d7864

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• updated version

  najoshi

  committed
  e076093

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• fixed bug in selecting datatype

  najoshi

  committed
  ed836b6

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• added -M option to put in N records for filtered out reads, changed -n to truncate at Ns rather than discard, lots of code refactoring, changed sickle xml for -M option

  najoshi

  committed
  b308f41

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Commits on Jul 18, 2014

• changing version number in citation

  najoshi

  committed
  dbff68b

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• fixed typo in usage

  najoshi

  committed
  a531f4e

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• fixed typo in usage

  najoshi

  committed
  c72e25d

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• updated version

  najoshi

  committed
  48955e7

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• added gzipped output file capability, changed xml to include interleaved input option

  najoshi

  committed
  375a319

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• added gzipped output file capability, changed xml to include interleaved input option

  najoshi

  committed
  8730b9a

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Commits on May 9, 2014

• Merge pull request #26 from ucdavis-bioinformatics/master

  Show description for 0058c83
  najoshi

  committed
  0058c83

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• fixed bug where excessive 5-prime low qualities caused incorrect trimming

  najoshi

  committed
  ff2d16c

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Commits on May 8, 2014

• Merge pull request #3 from najoshi/master

  Show description for d7c1717
  

  UC Davis Bioinformatics Core

  committed
  d7c1717

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• updated version in citation

  najoshi

  committed
  b181af0

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• fixed bug where excessive 5-prime low qualities caused incorrect trimming

  najoshi

  committed
  6504001

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Commits on Apr 4, 2014

• added citation info

  najoshi

  committed
  ce5abe1

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• added citation info

  najoshi

  committed
  48e3335

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• added copyright info

  najoshi

  committed
  9d0d140

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• added copyright info

  najoshi

  committed
  93beb5c

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Commits on Aug 7, 2013

• created new sickle xml for galaxy that infers quality type

  najoshi

  committed
  bab15f7

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• fixed usage bug

  najoshi

  committed
  e6b7ddf

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Commits on Jul 11, 2013

• updated version

  najoshi

  committed
  9ffa2da

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Commits on Jul 10, 2013

• fixed 5 prime trimming bug

  najoshi

  committed
  54d0c4b

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• change Makefile to add LIBS

  najoshi

  committed
  9c99f87

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