Hi!
Firstly thank you for the tool.
I try to use my gffcompare gtf output for my analysis. I have tried "/archive/yildize/alotaibi_lab/human_data/transdecoder/TransDecoder-TransDecoder-v5.5.0/util/gtf_to_alignment_gff3.pl /archive/yildize/alotaibi_lab/human_data/gffcompare/filtered_gffcompare.gtf > /archive/yildize/alotaibi_lab/human_data/transdecoder/transcripts.gff3" by taking "## generate alignment gff3 formatted output
../../util/gtf_to_alignment_gff3.pl transcripts.gtf > transcripts.gff3" as a reference from sampledata .sh but it creates empty transcripts.gff3 file. Also I tried "til/gtf_genome_to_cdna_fasta.pl transcripts.gtf test.genome.fasta > transcripts.fasta " but also create a empty fasta file.
How can I overcome the problem?
Thank you in advance for your interest.