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Commits on Sep 29, 2025

• removed cufflinks from message

  brianjohnhaas

  committed
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Commits on Aug 26, 2025

• no stderr blankline

  brianjohnhaas

  committed
  37ea714

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• not printing the track line

  brianjohnhaas

  committed
  943599d

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• avoid duplicating bed lines in output

  brianjohnhaas

  committed
  011bc21

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Commits on Oct 2, 2024

• Merge pull request #202 from colindaven/patch-1

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  brianjohnhaas

  authored
  f71e3db

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• solve hmmer download by getting specific version

  colindaven

  authored
  fc8de2b

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Commits on Mar 22, 2024

• Update README.md

  brianjohnhaas

  authored
  d51b9bb

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Commits on Sep 13, 2023

• Merge pull request #184 from mr-c/fix_test_paths

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  brianjohnhaas

  authored
  8b926ac

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• Fix some test paths

  mr-c

  committed
  97291ec

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• Merge pull request #183 from mr-c/python3

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  brianjohnhaas

  authored
  c9e3aec

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• Use 2to3 to port from Python2 to Python3

  

  tillea

  authored and

  mr-c

  committed
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Commits on Jul 16, 2023

• changelog update for v5.7.1

  brianjohnhaas

  committed
  15fb510

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• docker tests included for v5.7.1

  brianjohnhaas

  committed
  5791fde

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• add test docker

  brianjohnhaas

  committed
  817d772

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• update for docker test

  brianjohnhaas

  committed
  6b5274d

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• version 5.7.1

  brianjohnhaas

  committed
  55af00d

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• rigorous definition around workdir based on output directory, needed for docker

  brianjohnhaas

  committed
  d3c0844

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Commits on May 24, 2023

• adding blast and hammer to the docker

  brianjohnhaas

  committed
  eaed24f

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• add

  brianjohnhaas

  committed
  9db6bec

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Commits on Feb 15, 2023

• works with adjusted header format

  brianjohnhaas

  committed
  ed04390

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Commits on Jan 27, 2023

• updated tests so formatting matches

  brianjohnhaas

  committed
  2fb3958

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• updated version to 5.7.0

  brianjohnhaas

  committed
  39ec098

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• adding srand(1234) just in case

  brianjohnhaas

  committed
  db4001e

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• removed URI::Escape dependency

  brianjohnhaas

  committed
  e538d7a

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• include --use_complete_orfs in TransDecoder.LongOrfs to avoid partials and internals

  brianjohnhaas

  committed
  41bbf38

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• reports correct length for sequence in fasta file

  brianjohnhaas

  committed
  ad061ef

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• calc length in final protein file generation and include in header

  brianjohnhaas

  committed
  d6c7e1d

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• Merge branch 'master' of github.com:TransDecoder/TransDecoder into devel

  brianjohnhaas

  committed
  701fbf9

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• turned of uri encoding of names by default

  brianjohnhaas

  committed
  fdb098d

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• support both hmmscan or hmmsearch formatting

  brianjohnhaas

  committed
  569f6e3

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• update

  brianjohnhaas

  committed
  1acab80

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• update

  brianjohnhaas

  committed
  813fb68

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• some cleanup

  brianjohnhaas

  committed
  060b21a

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Commits on Apr 7, 2022

• prep for release 5.6.0

  brianjohnhaas

  committed
  b7e1501

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• removed conflict

  brianjohnhaas

  committed
  fd0c2a8

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