Abstract
Whether glucose is predominantly metabolized via oxidative phosphorylation or glycolysis differs between quiescent versus proliferating cells, including tumor cells. However, how glucose metabolism is coordinated with cell cycle in mammalian cells remains elusive. Here, we report that mammalian cells predominantly utilize the tricarboxylic acid (TCA) cycle in G1 phase, but prefer glycolysis in S phase. Mechanistically, coupling cell cycle with metabolism is largely achieved by timely destruction of IDH1/2, key TCA cycle enzymes, in a Skp2-dependent manner. As such, depleting SKP2 abolishes cell cycle-dependent fluctuation of IDH1 protein abundance, leading to reduced glycolysis in S phase. Furthermore, elevated Skp2 abundance in prostate cancer cells destabilizes IDH1 to favor glycolysis and subsequent tumorigenesis. Therefore, our study reveals a mechanistic link between two cancer hallmarks, aberrant cell cycle and addiction to glycolysis, and provides the underlying mechanism for the coupling of metabolic fluctuation with periodic cell cycle in mammalian cells.
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28 August 2020
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References
Warburg, O. On the origin of cancer cells. Science 123, 309â314 (1956).
Vander Heiden, M. G., Cantley, L. C. & Thompson, C. B. Understanding the Warburg effect: the metabolic requirements of cell proliferation. Science 324, 1029â1033 (2009).
Bensaad, K. et al. TIGAR, a p53-inducible regulator of glycolysis and apoptosis. Cell 126, 107â120 (2006).
Gordan, J. D., Thompson, C. B. & Simon, M. C. HIF and c-Myc: sibling rivals for control of cancer cell metabolism and proliferation. Cancer Cell 12, 108â113 (2007).
Manning, B. D. & Cantley, L. C. AKT/PKB signaling: navigating downstream. Cell 129, 1261â1274 (2007).
Christofk, H. R. et al. The M2 splice isoform of pyruvate kinase is important for cancer metabolism and tumour growth. Nature 452, 230â233 (2008).
Wang, H. et al. The metabolic function of cyclin D3-CDK6 kinase in cancer cell survival. Nature 546, 426â430 (2017).
Hanahan, D. & Weinberg, R. A. Hallmarks of cancer: the next generation. Cell 144, 646â674 (2011).
Tu, B. P., Kudlicki, A., Rowicka, M. & McKnight, S. L. Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes. Science 310, 1152â1158 (2005).
Chen, Z., Odstrcil, E. A., Tu, B. P. & McKnight, S. L. Restriction of DNA replication to the reductive phase of the metabolic cycle protects genome integrity. Science 316, 1916â1919 (2007).
Tudzarova, S. et al. Two ubiquitin ligases, APC/C-Cdh1 and SKP1-CUL1-F (SCF)-beta-TrCP, sequentially regulate glycolysis during the cell cycle. Proc. Natl. Acad. Sci. USA 108, 5278â5283 (2011).
Colombo, S. L. et al. Anaphase-promoting complex/cyclosome-Cdh1 coordinates glycolysis and glutaminolysis with transition to S phase in human T lymphocytes. Proc. Natl. Acad. Sci. USA 107, 18868â18873 (2010).
Bao, Y. et al. Energy management by enhanced glycolysis in G1-phase in human colon cancer cells in vitro and in vivo. Mol. Cancer Res. 11, 973â985 (2013).
Benanti, J. A., Cheung, S. K., Brady, M. C. & Toczyski, D. P. A proteomic screen reveals SCFGrr1 targets that regulate the glycolyticâgluconeogenic switch. Nat. Cell Biol. 9, 1184â1191 (2007).
Herrero-Mendez, A. et al. The bioenergetic and antioxidant status of neurons is controlled by continuous degradation of a key glycolytic enzyme by APC/CâCdh1. Nat. Cell Biol. 11, 747â752 (2009).
Almeida, A., Bolaños, J. P. & Moncada, S. E3 ubiquitin ligase APC/C-Cdh1 accounts for the Warburg effect by linking glycolysis to cell proliferation. Proc. Natl. Acad. Sci. USA 107, 738â741 (2010).
Sakamaki, T. et al. Cyclin D1 determines mitochondrial function in vivo. Mol. Cell Biol. 26, 5449â5469 (2006).
Shimizu, K. et al. The SCFβ-TRCP E3 ubiquitin ligase complex targets Lipin1 for ubiquitination and degradation to promote hepatic lipogenesis. Sci. Signal. 10, eaah4117 (2017).
Pavlova, N. N. & Thompson, C. B. The emerging hallmarks of cancer metabolism. Cell Metab. 23, 27â47 (2016).
Yuan, M., Breitkopf, S. B., Yang, X. & Asara, J. M. A positive/negative ion-switching, targeted mass spectrometry-based metabolomics platform for bodily fluids, cells, and fresh and fixed tissue. Nat. Protoc. 7, 872â881 (2012).
Srere, P. A. Complexes of sequential metabolic enzymes. Annu. Rev. Biochem. 56, 89â124 (1987).
Kim, S. et al. Suppression of tumorigenesis in mitochondrial NADP+-dependent isocitrate dehydrogenase knock-out mice. Biochim. Biophys. Acta 1842, 135â143 (2014).
Itsumi, M. et al. Idh1 protects murine hepatocytes from endotoxin-induced oxidative stress by regulating the intracellular NADP(+)/NADPH ratio. Cell Death Differ. 22, 1837â1845 (2015).
Gohil, V. M. et al. Nutrient-sensitized screening for drugs that shift energy metabolism from mitochondrial respiration to glycolysis. Nat. Biotechnol. 28, 249â255 (2010).
Wang, Z., Liu, P., Inuzuka, H. & Wei, W. Roles of F-box proteins in cancer. Nat. Rev. Cancer 14, 233â247 (2014).
Liu, P. et al. Cell-cycle-regulated activation of Akt kinase by phosphorylation at its carboxyl terminus. Nature 508, 541â545 (2014).
Koff, A. et al. Formation and activation of a cyclin E-cdk2 complex during the G1 phase of the human cell cycle. Science 257, 1689â1694 (1992).
Zhang, H., Kobayashi, R., Galaktionov, K. & Beach, D. pl9skp1 and p45skp2 are essential elements of the cyclin A-CDK2 S phase kinase. Cell 82, 915â925 (1995).
Lin, H. K. et al. Skp2 targeting suppresses tumorigenesis by Arf-p53-independent cellular senescence. Nature 464, 374â379 (2010).
Wu, L. et al. Specific small molecule inhibitors of Skp2-mediated p27 degradation. Chem. Biol. 19, 1515â1524 (2012).
Carrano, A. C., Eytan, E., Hershko, A. & Pagano, M. SKP2 is required for ubiquitin-mediated degradation of the CDK inhibitor p27. Nat. Cell Biol. 1, 193â199 (1999).
Donato, V. et al. The TDHâGCN5L1âFbxo15âKBP axis limits mitochondrial biogenesis in mouse embryonic stem cells. Nat. Cell Biol. 19, 341â351 (2017).
Owusu-Ansah, E., Yavari, A., Mandal, S. & Banerjee, U. Distinct mitochondrial retrograde signals control the G1-S cell cycle checkpoint. Nat. Genet. 40, 356â361 (2008).
Inuzuka, H. et al. Acetylation-dependent regulation of Skp2 function. Cell 150, 179â193 (2012).
Carette, J. E. et al. Haploid genetic screens in human cells identify host factors used by pathogens. Science 326, 1231â1235 (2009).
Sanjana, N. E., Shalem, O. & Zhang, F. Improved vectors and genome-wide libraries for CRISPR screening. Nat. Methods 11, 783â784 (2014).
Boehm, J. S., Hession, M. T., Bulmer, S. E. & Hahn, W. C. Transformation of human and murine fibroblasts without viral oncoproteins. Mol. Cell Biol. 25, 6464â6474 (2005).
Wan, L. et al. APCCdc20 suppresses apoptosis through targeting Bim for ubiquitination and destruction. Dev. Cell 29, 377â391 (2014).
Wei, W. et al. Degradation of the SCF component Skp2 in cell-cycle phase G1 by the anaphase-promoting complex. Nature 428, 194â198 (2004).
Inuzuka, H. et al. SCF FBW7 regulates cellular apoptosis by targeting MCL1 for ubiquitylation and destruction. Nature 471, 104â109 (2011).
Acknowledgements
This work was supported in part by the NIH grants (CA229307 and CA200573 to W.W.; CA183914 to L.W.; R01CA068490, P50CA101942 and R35CA210068 to W.G.K.), the National Basic Research Program of China (2015CB553602 to J.K.L.; 2015CB856302 to J.G.L.), the National Natural Science Foundation of China (91649106, 31570777, 31770917 and 31700684 to J.K.L.; 81802787 to Y.P.). Fundamental Research Funds for the Central Universities (08143008 and 08143101 to J.K.L.; zrzd2017013 to J.G.L.) and American Cancer Society (to H.I.). We thank Wangxiao He, Zhanwu Hou and Huadong Liu for their help with the peptide synthesis, thank Evan Chen for his kind help with metabolite labeling, and thank Brian J. North and Wei lab members for critical reading of the manuscript, and members of the Wei, Pandolfi, Kaelin and Liu laboratories for helpful discussions.
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J.L. and Y.P. designed and performed most of the experiments with assistance from L.S., L.W., H.I., J.G.L., J.P.G., J.Z., S.Z., X.W., J.G., X.D., S.F. and L.J., M.Y. and J.M.A. performed the LC-MS/MS metabolomic profiling and mass spectrometry analysis of IDH1 T157 phosphorylation. W.W., J.K.L., P.P.P., and W.G.K. supervised the study. J.L. and W.W. wrote the manuscript. All authors commented on the manuscript.
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W.W. is a co-founder and consultant of the ReKindle Therapeutics. All other authors declare no competing interests.
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Liu, J., Peng, Y., Shi, L. et al. Skp2 dictates cell cycle-dependent metabolic oscillation between glycolysis and TCA cycle. Cell Res 31, 80â93 (2021). https://doi.org/10.1038/s41422-020-0372-z
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DOI: https://doi.org/10.1038/s41422-020-0372-z
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