Skip to main content
Log in

The complete chloroplast genome of the endangered Chinese paperbark maple, Acer griseum (Sapindaceae)

  • Technical Note
  • Published:
Conservation Genetics Resources Aims and scope Submit manuscript

Abstract

The paperbark maple, Acer griseum, is an excellent landscape and ornamental species endemic to China, but its populations are now very fragmented and in decline. Here we characterized the complete chloroplast (cp) genome of A. griseum using genome skimming sequencing. The A. griseum cp genome was 156,857 bp in size, with a large single copy region of 85,227 bp and a small single copy region of 18,134 bp separated by a pair of inverted repeats of 26,748 bp. The genome encoded a total of 134 genes, of which 113 were unique, including 78 protein-coding genes, 4 rRNA genes and 31 tRNA genes. The overall GC content of the cp genome was 37.9%. The phylogenomic analysis strongly supported the monophyly of Acer and placed A. griseum as the basal-most species in Acer lineage. This complete cp genome will be useful for further studies of the endangered maple tree.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Explore related subjects

Discover the latest articles and news from researchers in related subjects, suggested using machine learning.

References

  • Gibbs D, Chen YS (2009) The red list of maples. Botanic Gardens Conservation International, Richmond

    Google Scholar 

  • Jia Y, Yang J, He YL, He Y, Niu C, Gong LL, Li ZH (2016) Characterization of the whole chloroplast genome sequence of Acer davidii Franch (Aceraceae). Conserv Genet Resour. doi:10.1007/s12686-016-0530-2

    Google Scholar 

  • Li ZH, Xie YS, Zhou T, Jia Y, He YL, Yang J (2015) The complete chloroplast genome sequence of Acer morrisonense (Aceraceae). Mitochondrial DNA. doi:10.3109/19401736.2015.1118091

    Google Scholar 

  • Lohse M, Drechsel O, Kahlau S, Bock R (2013) OrganellarGenomeDRAW-a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets. Nucl Acids Res 41(Web Server issue):W575-W581

    PubMed Central  Google Scholar 

  • Schattner P, Brooks AN, Lowe TM (2005) The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucl Acids Res 33:686–689

    Article  Google Scholar 

  • Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312–1313

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Straub SC, Parks M, Weitemier K, Fishbein M, Cronn RC, Liston A (2012) Navigating the tip of the genomic iceberg: next-generation sequencing for plant systematics. Am J Bot 99:349–364

    Article  CAS  PubMed  Google Scholar 

  • Sun S, Yu XD, Zheng YQ, Chen P, Zhang CH (2014) Isolation and characterization of twenty-seven polymorphic microsatellite loci in endangered Chinese paperbark maple, Acer griseum (Dicotyledoneae: Aceraceae). Biochem Syst Ecol 56:99–103

    Article  CAS  Google Scholar 

  • Wang JH (2015) Preliminary study on growth performance and molecular phylogeography of natural populations in an endangered maple, Acer griseum (Dicotyledoneae: Sapindaceae), endemic to China. Master Thesis, Chinese Academy of Forestry Sciences

  • Wang WC, Chen SY, Zhang XZ (2016) Chloroplast genome evolution in Actinidiaceae: clpP loss, heterogenous divergence and phylogenomic practice. PLoS One 11:e0162324

    Article  PubMed  PubMed Central  Google Scholar 

  • Wyman SK, Jansen RK, Boore JL (2004) Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20:3252–3255

    Article  CAS  PubMed  Google Scholar 

  • Xu TZ, Chen YS, de Jong PC, Oterdoom HJ, Chang CS (2008) Oxalidaceae through Aceraceae. In: Wu ZY, Raven PH, Hong DY (eds) Flora of China, vol 11. Science Press, Beijing, p 515–553

    Google Scholar 

Download references

Acknowledgements

This work is supported by the National Natural Science Foundation of China (31600173) and the Basic Science Fund of Northwest A&F University (2452016052).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Xian-Zhi Zhang.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Wang, WC., Chen, SY. & Zhang, XZ. The complete chloroplast genome of the endangered Chinese paperbark maple, Acer griseum (Sapindaceae). Conservation Genet Resour 9, 527–529 (2017). https://doi.org/10.1007/s12686-017-0715-3

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12686-017-0715-3

Keywords