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. 2025 Oct 3:16:1635141.
doi: 10.3389/fpls.2025.1635141. eCollection 2025.

Characterization of a sesquiterpene synthase and a short-chain dehydrogenase in zerumbone biosynthesis and the applications in engineered Saccharomyces cerevisiae

Affiliations

Characterization of a sesquiterpene synthase and a short-chain dehydrogenase in zerumbone biosynthesis and the applications in engineered Saccharomyces cerevisiae

Mengdie Xu et al. Front Plant Sci. .

Abstract

Introduction: Zerumbone is a pharmacologically active sesquiterpenoid with limited availability. This study aims to elucidate its biosynthetic pathway in Curcuma wenyujin by identifying and characterizing the key enzymes responsible for its production.

Methods: Candidate genes were selected via transcriptome analysis and phylogenetics. CwTPS8 and CwSDR1 were cloned and functionally characterized using in vitro enzyme assays and heterologous expression in engineered Saccharomyces cerevisiae. Molecular docking and site-directed mutagenesis were applied to investigate the catalytic mechanism of CwTPS8.

Results: CwTPS8 was identified as a multifunctional sesquiterpene synthase that catalyzes the formation of α-humulene (a key zerumbone precursor) and β-caryophyllene as main products, along with several minor sesquiterpenes. Mutagenesis studies identified critical residues (e.g., Thr437, Cys436) that significantly shift product specificity toward α-humulene. CwSDR1 was characterized as a short-chain dehydrogenase that efficiently oxidizes 8-hydroxy-α-humulene to zerumbone. A de novo biosynthetic pathway was reconstructed in yeast, resulting in zerumbone production at 0.50 μg/L.

Discussion: This study expands the genetic toolkit for zerumbone biosynthesis and provides insights into enzyme engineering and metabolic engineering strategies to enhance production. Limitations in precursor supply and catalytic efficiency highlight areas for future optimization.

Keywords: Curcuma wenyujin; sesquiterpene synthase; short-chain dehydrogenase; zerumbone; α-humulene.

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Conflict of interest statement

Authors QW and TH were employed by the company Zhejiang Medicine Co., Ltd. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Figures

Figure 1
Figure 1
The biosynthetic pathway of zerumbone and its pharmacological effects. Illustrations used in pharmacological effects of zerumbone created with biorender.
Figure 2
Figure 2
The phylogenetic analysis and conserved motif analysis of CwTPSs. (A) The phylogenetic tree of CwTPSs. The genes used in this analysis are listed in Supplementary Table S3 ; (B) The conserved motif analysis of CwTPS8 which has a conserved basic residue cluster “RxR” motif, the metal-binding “DDxxD” motif and the substrate-stabilizing “(N/D) Dxx(S/T) xxxE” motif.
Figure 3
Figure 3
GC-MS analysis of the products of CwTPS8. (A) GC-MS analysis of the products of the in vitro enzymatic reaction of CwTPS8. Standards of β-caryophyllene, α-Humulene is a product of enzyme with characteristic function. (B) GC-MS analysis of the products of yeast strains expressing CwTPS8. Standards of cryptomeridiol (95% purity).
Figure 4
Figure 4
The molecular docking and site-directed mutagenesis research of CwTPS8. (A) The molecular docking of CwTPS8 and the substrate FPP. The labeled amino acids are key residues of the active pocket; (B) GC-MS analysis of products of the mutants. (C) The quantitative analysis of α-humulene in the mutants. Data are mean ± SD, n = 4.
Figure 5
Figure 5
Sequence analysis and functional characterization of CwSDR1 and the construction of a yeast strain for the de novo synthesis of zerumbone. (A) Sequence analysis of CwSDR1, containing the Rossmann fold, the conserved cofactor-binding motif “TGxxxGxG” and the catalytic triad “SYK” motif; (B) GC-MS analysis of the products of yeast strains expressing CwSDR1; (C) Construction of the endogenous zerumbone biosynthetic pathway in yeast, with red highlighting overexpressed genes and gray indicating knockout/downregulated genes.

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