[global_homology] # protein family annotation based on global similarity: [yes] process this step, [no] skip this step [ Default: yes ] uniref = yes [domain_motif] # domain annotation: [yes] process this step, [no] skip this step [ Default: yes ] interproscan = yes # Pfam2GO to annotate GOs: [yes] process this step, [no] skip this step [ Default: yes ] pfam2go = yes # domain-domain interaction from DOMINE database: [yes] process this step, [no] skip this step [ Default: yes ] domine = yes # DDI with SIFTS evidence: [yes] process this step, [no] skip this step [ Default: yes ] sifts = yes # DDI with human expression from ExpAtlas database: [yes] process this step, [no] skip this step [ Default: yes ] expatlas = yes # subcellular annotation: [yes] process this step, [no] skip this step [ Default: yes ] psortb = yes [abundance] # summary DNA abundance: [label] provide label for DNA abundance, e.g. DNA_abundance, [no] skip this step [ Default: DNA_abundance ] dna_abundance = DNA_abundance # differential abundance based on DNA abundance: [label] provide label for DA annotation, e.g. MaAsLin2_DA, [no] skip this step [ Default: MaAsLin2_DA ] dna_da = MaAsLin2_DA [integration] # summarize annotation info: [yes] process this step, [no] skip this step [ Default: yes ] summary_ann = yes # generate finalized annotations: [yes] process this step, [no] skip this step [ Default: yes ] finalization = yes