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Table 2 Missense SNVs identified in DNA-damage response genes of CLBL-1 and GL-1 cell lines

From: PARP inhibitor olaparib induces DNA damage and acts as a drug sensitizer in an in vitro model of canine hematopoietic cancer

 

Cell line

CDS position

Exon

Frequency of the alternate allele

VEP prediction

Fido-SNP prediction

BRCA1

GL-1

c.604 A > G

9

HE

Tolerated

Benign

c.715G > A

10

HE

Tolerated

Benign

c.1329 A > C

10

HE

Deleterious

Pathogenic

c.3619 A > G

10

HE

Tolerated

Benign

c.5186G > A

13

HE

Tolerated

Benign

BRCA2

CLBL-1

c.428 A > Ga

5

HE

Tolerated

Pathogenic

c.1158T > Ga

10

HO

Tolerated

Benign

c.2401 A > C

11

HE

Deleterious

Benign

c.4304 A > Ga

11

HE

Tolerated

Benign

GL-1

c.428 A > Ga

5

HE

Tolerated

Pathogenic

c.1158T > Ga

10

HE

Tolerated

Benign

c.4304 A > Ga

11

HE

Tolerated

Benign

c.6686G > T

11

HE

Tolerated

Benign

TP53

CLBL-1

c.374 C > T

5

HE

Deleterious

Pathogenic

c.764G > A

8

HE

Tolerated*

Pathogenic

GL-1

c.709 C > T

7

HO

Deleterious

Benign

ATM

CLBL-1

c.3431 A > Ta

25

HE

Tolerated

Benign

c.5267T > Ca

36

HO

Tolerated

Benign

GL-1

c.3431 A > Ta

25

HO

Tolerated

Benign

c.5267T > Ca

36

HO

Tolerated

Benign

ATR

CLBL-1

c.539G > A

4

HO

Tolerated**

Pathogenic

  1. aSNVs shared by CLBL-1 and GL-1 cell lines; *SIFT(Sorting Intolerant From Tolerant) = 0.09; **SIFT = 0.05; HE: heterozygous; HO: homozygous