To celebrate 400 stars ⭐️on GitHub, Cutadapt 4.1 ✂️is now available. It can find rightmost adapter occurrences (closing a 5 year old issue) and allows you to use search parameters together with "file:a.fa" cutadapt.readthedocs.io/en/stable/chan…
- I’ve published type annotations for pysam pypi.org/project/pysam-… (for use with Mypy, PyCharm etc.) Hopefully to be integrated into pysam github.com/pysam-develope…
- Cutadapt 3.5 released; it can write statistics in JSON format: cutadapt.readthedocs.io/en/stable/refe… Pro tip: Use jq to extract the info you need, such as the number of found adapters: jq '.adapters_read1[0].total_matches' file.cutadapt.json
- Cutadapt 2.8 just released. It comes with a --revcomp option: This checks both the read and its reverse complement for an adapter and swaps it if necessary. Changelog at cutadapt.readthedocs.io/en/latest/chan…
- Cutadapt 2 is out! Focus was on speed and removing ancient features. But most importantly, I’ve added an animated progress bar ;-) cutadapt.readthedocs.io/en/stable/chan… [ 8<-------] [ 8=-------] [ 8<------]
