Bioconductor Shiny

Showing : shiny • reset

votes

replies

1.0k

views

shiny EBImage

3.6 years ago Wolfgang Huber &starf; 13k

votes

1.4k

views

ChAMP shiny ChAMPdata

updated 3.9 years ago by anna.stanislawska • 0 • written 3.9 years ago by Mari • 0

votes

replies

1.2k

views

BatchQC RNA-seq R Shiny batch-effect

5.8 years ago manninm • 0

votes

1.4k

views

AnnotationHub Shiny Rstudio

updated 6.0 years ago by shepherl 4.3k • written 6.0 years ago by bwiley4 • 0

votes

replies

1.8k

views

iSEE shiny summarizedExperiment News

6.9 years ago Aaron Lun &starf; 29k

votes

replies

2.2k

views

deseq2 shiny design rhandsontable hot_to_r()

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by hinkel2 • 0

votes

2.6k

views

DEBrowser shiny

7.1 years ago tomasfly • 0

votes

replies

2.1k

views

rtracklayer browsegenome shiny

updated 7.3 years ago by Michael Lawrence &starf; 11k • written 7.3 years ago by vivek82 • 0

votes

replies

7.1k

views

shiny package deploy

7.9 years ago lloyd.izard &utrif; 80

votes

replies

1.9k

views

SC3 single-cell shiny

updated 8.8 years ago by Vladimir Kiselev &utrif; 150 • written 8.8 years ago by cfustero &utrif; 20

votes

2.1k

views

ChAMP Epigenetics plotly Shiny GUI News

9.3 years ago • updated 9.1 years ago Yuan Tian &utrif; 90

votes

1.6k

views

shiny

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by bhakti.dwivedi • 0

vote

1.8k

views

cellcode shiny heatmap

updated 9.8 years ago by Andrzej Oleś &utrif; 750 • written 9.8 years ago by christopher.clarskon15 &utrif; 20

votes

2.2k

views

limmagui shiny

9.9 years ago christopher.clarskon15 &utrif; 20

votes

replies

4.7k

views

annotation genomicranges visualization docker shiny Tutorial

9.9 years ago Vincent J. Carey, Jr. 6.7k

votes

replies

2.1k

views

R validate shiny

10.3 years ago alptaciroglu &utrif; 50

vote

replies

3.5k

views

shiny network interactions

11.3 years ago pshannon &utrif; 100

17 results • Page 1 of 1

Recent ...

Replies

Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Awards • All

Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey &utrif; 760