Bioconductor Pairwisealignment

Showing : pairwisealignment • reset

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1.8k

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SAM samtools pairwisealignment alignment blastn

7.5 years ago ktehmsen • 0

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biostrings pairwisealignment

updated 8.1 years ago by Hervé Pagès 16k • written 8.1 years ago by kgorczak &utrif; 10

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biostrings alignment pairwisealignment

updated 8.2 years ago by Hervé Pagès 16k • written 8.2 years ago by dhwani2410 • 0

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pairwisealignment SNP dnasequence

9.0 years ago lordbleys • 0

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translation pairwisealignment

9.5 years ago igferres • 0

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1.3k

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pairwisealignment indel

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by oliwindram &utrif; 10

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2.5k

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biostrings pairwisealignment

updated 9 months ago by rohitsatyam102 &utrif; 20 • written 9.8 years ago by Steve Lianoglou &starf; 13k

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biostrings pairwisealignment

updated 9.8 years ago by shepherl 4.3k • written 9.8 years ago by jdydu • 0

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1.6k

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biostrings pairwisealignment

updated 10.3 years ago by Hervé Pagès 16k • written 10.4 years ago by boris.steipe • 0

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1.6k

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pairwisealignment biostrings

10.4 years ago vincent.plagnol &utrif; 10

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2.1k

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biostrings pairwisealignment

10.4 years ago vincent.plagnol &utrif; 10

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3.6k

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Biostrings pairwiseAlignment

updated 11.3 years ago by Hervé Pagès 16k • written 11.3 years ago by branislav misovic &utrif; 120

12 results • Page 1 of 1

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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Awards • All

Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey &utrif; 760