Bioconductor MinfiData

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DNA minfiData minfiDataEPIC DNAMethylation minfi

11 months ago user_bioinfo • 0

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840

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bumphunter minfiData minfi bumphun

updated 19 months ago by James W. MacDonald 68k • written 19 months ago by kumakeren16 • 0

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1.0k

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minfiData minfi

updated 22 months ago by Basti &utrif; 780 • written 22 months ago by clacarion • 0

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720

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methylclockData minfi methylclock minfidata

updated 23 months ago by James W. MacDonald 68k • written 23 months ago by sharangiiv • 0

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1.9k

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RnBeads minfiData minfi EPICarray

updated 2.8 years ago by Basti &utrif; 780 • written 2.8 years ago by Jitendra &utrif; 10

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2.1k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 2.9 years ago by James W. MacDonald 68k • written 2.9 years ago by Grace • 0

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2.4k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 2.9 years ago by Grace • 0

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1.4k

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minfiData ChAMP

4.1 years ago behr201 • 0

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1.4k

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minfi minfiData MethylationArrayData

4.5 years ago ponche_de_kiwi • 0

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2.9k

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minfiData plotsex minfi minfiDataEPIC r

updated 5.0 years ago by suman • 0 • written 5.0 years ago by Bethan • 0

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minfi methylation dataimport minfidata missmethyl

updated 7.4 years ago by James W. MacDonald 68k • written 7.4 years ago by moldach &utrif; 20

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1.9k

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minfi minfidata rgl. mac os x el capitan

updated 9.8 years ago by Kasper Daniel Hansen &starf; 6.5k • written 9.8 years ago by holbrookjoanna • 0

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

10.8 years ago alejandretheodore • 0

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2.4k

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minfi minfidata illumina methylation dmpfinder

updated 11.4 years ago by James W. MacDonald 68k • written 11.4 years ago by michael.zulyniak • 0

14 results • Page 1 of 1

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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

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Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey &utrif; 760