Bioconductor Metadata

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metadata

4.7 years ago Donghui &utrif; 10

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rtracklayer Rsamtools GAlignments GRanges metadata

updated 5.7 years ago by Hervé Pagès 16k • written 5.7 years ago by Robert &utrif; 10

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deseq2 design metadata

updated 6.1 years ago by sebastian.lobentanzer &utrif; 60 • written 6.1 years ago by Assa Yeroslaviz &starf; 1.5k

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recount metadata tcga

updated 8.0 years ago by rosabellascottgm • 0 • written 8.0 years ago by Mariela Cortés-López • 0

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variantannotation locatevariants metadata mcols

updated 8.2 years ago by Valerie Obenchain &starf; 6.8k • written 8.2 years ago by enricoferrero &utrif; 680

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granges metadata

updated 8.7 years ago by Michael Lawrence &starf; 11k • written 8.7 years ago by Ryan C. Thompson &starf; 7.9k

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metadata grangeslist granges sample

updated 8.8 years ago by Michael Lawrence &starf; 11k • written 8.8 years ago by Sim1pall8a • 0

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GRanges metadata subsetting

updated 9.5 years ago by Michael Lawrence &starf; 11k • written 9.5 years ago by mdeea123 &utrif; 10

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granges metadata coursera

updated 9.7 years ago by Michael Lawrence &starf; 11k • written 9.7 years ago by likeeatingpizza &utrif; 10

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genomicfeatures txdb maketxdbfromgff metadata

updated 9.8 years ago by Valerie Obenchain &starf; 6.8k • written 9.8 years ago by TimothéeFlutre &utrif; 80

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variantannotation vranges readvcf readvcfasvranges metadata

11.0 years ago summerela • 0

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grangeslist metadata

11.3 years ago Robert K. Bradley &utrif; 40

12 results • Page 1 of 1

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

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Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Popular Question to Peter Hickey &utrif; 760