A full Python port and extension of the original SoupX R package
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Updated
May 18, 2026 - Python
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soupx
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Single-cell RNA-seq workflow for lung regeneration after influenza injury: per-tool and end-to-end pipeline schematics built on the Niethamer 2025 Cell Stem Cell atlas (SoupX, Scrublet, scds, Seurat, Slingshot, tradeSeq)
bioinformatics scrna-seq single-cell slingshot seurat trajectory-inference soupx lung-regeneration scrublet tradeseq
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Updated
Aug 9, 2026 - Python
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