Python package that uses colorspace-based segmentation to analyze histopathology images.
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Feb 7, 2024 - Python
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collagen
Here are 23 public repositories matching this topic...
A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).
fibers image-processing tfm orientation ecm microscopy imaging collagen cell-mechanics fibrosis traction-force-microscopy contractility mechanobiology
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Jan 17, 2025 - Python
A Python package to conduct 3D Traction Force Microscopy on multicellular aggregates (spheroids).
finite-elements biophysics particle-image-velocimetry collagen traction-force-microscopy material-simulation multicellular-aggregates spheroid
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Aug 27, 2026 - Python
Intelligent System for Analysis, Model Building And Rational Design.
python api bioinformatics analysis structural-biology pypi computational-biology modelling bristol protein-design coiled-coil collagen
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Apr 20, 2018 - Python
Shape Collage generator for Windows !
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Sep 25, 2019
A web application for atomistic modelling of coiled coils and collagens.
javascript docker science flask mongodb elm web-app protein-structure protein scientific-computing coiled-coil collagen isambard woolfson-group
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Nov 22, 2023 - Elm
ImageJ / FIJI script to analyse picrosirius red stained sections imaged under polarising light
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Oct 2, 2020
MSDS Thesis - Pan-Collagen Survival Analysis of CNV in Ovarian Cancer
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Aug 29, 2021 - HTML
ImageJ / FIJI script to assess the orientation of collagen fibres in SHG images
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Oct 2, 2020
chain tracing program developed to analyze AFM images of single molecules
afm image-processing dna collagen tracing-applications persistence-length filament-tracking afm-image-segmentation
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Jul 27, 2022 - MATLAB
Species identification based on mass spectrometry biomarker clustering
binary-data python3 species mass-spectrometry clustering-algorithm clustering-evaluation collagen hierarchical-clustering biomarkers k-modes k-means-implementation-in-python species-identity species-identification collagen-peptidemass-fingerprinting
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Apr 18, 2019 - Jupyter Notebook
Matlab based program for automatic chain tracing for AFM images of single molecule collagen, DNA, and other polymers.
automation afm image-processing dna image-segmentation collagen tracing-applications persistence-length filament-tracking filament-detection afm-image-segmentation
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Jun 23, 2022 - MATLAB
ImageJ / FIJI script to analyse picrosirius red stained sections imaged using fluorescence
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Oct 17, 2025 - ImageJ Macro
Analysis of stromal collagen organization in pancreatic cancer H&E images from the TCGA cohort using Curvelet Transform features and CT-FIRE fiber extraction.
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May 19, 2026 - Python
Sinolife Collagen 10 000 mg — bir sahifali savdo landing sayti (UZ/RU)
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Sep 7, 2026 - HTML
Analytical workflow for collagen quantification. Ryder, C. et al. (2026)
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May 23, 2026 - Jupyter Notebook
Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
survival-analysis signaling-pathways collagen differential-gene-expression metabolic-models prostate-cancer semi-supervised-clustering gradient-boosted-machines gene-ontology-terms gene-set-enrichment-analysis
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Feb 26, 2024 - R
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