GitHub - tedtop/CSCI-451-Computational-Biology: Introduction to Bioinformatics course at University of Montana

Syllabus: https://scholarworks.umt.edu/cgi/viewcontent.cgi?article=4814&context=syllabi2021-2025

Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
ApproximatePatternCount		ApproximatePatternCount
ApproximatePatternMatching		ApproximatePatternMatching
Change		Change
ClumpFinding		ClumpFinding
DeBruijnKmers		DeBruijnKmers
DeBruijnString		DeBruijnString
FrequentWords		FrequentWords
HammingDistance		HammingDistance
KmerComposition		KmerComposition
LongestCommonSubsequence		LongestCommonSubsequence
LongestPathLength		LongestPathLength
MinimumSkew		MinimumSkew
MotifEnumeration		MotifEnumeration
OverlapGraph		OverlapGraph
PatternCount		PatternCount
PatternMatching		PatternMatching
ProfileMostProbableKmer		ProfileMostProbableKmer
ReverseComplement		ReverseComplement
E_coli.txt		E_coli.txt
HMM_diagram_complete.png		HMM_diagram_complete.png
Pseudocode.pdf		Pseudocode.pdf
README.md		README.md
Salmonella_enterica.txt		Salmonella_enterica.txt
Vibrio_cholerae.txt		Vibrio_cholerae.txt
chessboard.png		chessboard.png
ecoli_clumps.py		ecoli_clumps.py
hmm-emission-probability.py		hmm-emission-probability.py
hmm-path-probability.py		hmm-path-probability.py
hmm_emission_dataset_40027_10.txt		hmm_emission_dataset_40027_10.txt
hmm_path_dataset_40027_8.txt		hmm_path_dataset_40027_8.txt
knight-moves-animation.py		knight-moves-animation.py
leaf-distances.py		leaf-distances.py
leaf_distance_dataset_39959_12.txt		leaf_distance_dataset_39959_12.txt
leaf_distance_result_matrix.txt		leaf_distance_result_matrix.txt
limb-length.py		limb-length.py
limb_length_dataset_39960_8.txt		limb_length_dataset_39960_8.txt
upgma-implementation.py		upgma-implementation.py
upgma-input.txt		upgma-input.txt
upgma_dataset_39963_8.txt		upgma_dataset_39963_8.txt

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