2.0.0

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Unify method/flavor/backend/… parameters

Area – APIAPI designAPI design

Status: Open.

#2828 In scverse/scanpy;

· flying-sheep opened on Jan 25, 2024

[Proposal] Integrate Marsilea to visualize AnnData

Area - Plotting 🌺

Status: Open.

Enhancement

#2444 In scverse/scanpy;

· Mr-Milk opened on Mar 9, 2023

fix: consistent modularity by using Weighted_Adjacency directly

Status: Draft (not ready).

scverse/scanpynumber 4113

#4113 In scverse/scanpy;

· flying-sheep opened on May 8, 2026

Investigate our neighbors algorithm choice

Area - Topology 🍩Neighbor graphsNeighbor graphs

Status: Open.

Enhancement

#4131 In scverse/scanpy;

· ilan-gold opened on May 19, 2026

Remove sc.external

Area – APIAPI designAPI design

Area – ExternalDealing with external toolsDealing with external tools

MetaA meta-request to be implemented in multiple stepsA meta-request to be implemented in multiple steps

Status: Open.

#2717 In scverse/scanpy;

· flying-sheep opened on Oct 26, 2023