The aim of this repo is to collate scripts that we use in our work.

Most of the scripts are generic and can be used as is, or use as a starting point for a related analysis task. More specialised scripts are typically in their own repo or associated with a paper repo.

Very useful stuff is in imagej-macros and in the quantixed ImageJ Update Site for Fiji.

Scripts are organised by topic.

• Coloc
• Filtering
• Measuring
• Metadata
• ROIs
• Templates
• Tracking
• Utility

For more about our lab's work visit: roylelab.org

Note that some scripts may overwrite the input data. Take time to read the comments and ensure you understand the purpose of the script and always use a copy of primary data as input.

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Disclaimer: These scripts are shared for educational and research purposes only. We are not responsible for any data loss or damage that may occur through their use.