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Commits on Feb 26, 2026

• Merge pull request #108 from zwets/master

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  fmaguire

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Commits on Feb 25, 2026

• Fix failing GitHub workflow

  zwets

  committed
  ad99c6b

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• Bump to version 1.2.0

  zwets

  committed
  0adf4b5

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Commits on Dec 1, 2025

• Fix tests for ResFinderIO change

  zwets

  committed
  7c09199

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• Better align ResFinder hamronized output with AFP and RGI

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  zwets

  committed
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Commits on Nov 30, 2025

• Make container compatible with Nextflow and Singularity

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  zwets

  committed
  ef2593c

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• Fix typo in Docker image LABEL

  zwets

  committed
  2fa7b12

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• Reduce the Docker container size by 1G

  zwets

  committed
  42a85d5

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• Minor typos and spelling fixes

  zwets

  committed
  a79437d

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Commits on Nov 27, 2025

• Update python versions in CI

  fmaguire

  committed
  6692270

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• Fix python 3.14 incompatibility and pandas deprecation warnings

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  fmaguire

  committed
  72fe2b9

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Commits on Jan 17, 2025

• Merge pull request #101 from zwets/update-rgi-parser

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  fmaguire

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Commits on Jan 15, 2025

• Fix failing GitHub workflow

  zwets

  committed
  6140f96

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• RGI: add mappings for antibiotics and hit positions

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  zwets

  committed
  39a6a67

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• Minor fixes and cheer up flake

  zwets

  committed
  2305306

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Commits on Jan 7, 2025

• Merge pull request #99 from zwets/fix-mykrobe

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  fmaguire

  authored
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Commits on Jan 4, 2025

• Bump version to 1.1.9

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  zwets

  committed
  507d8d7

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• Add test for empty Mykrobe JSON

  zwets

  committed
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• Make Mykrobe hamronizer accept empty JSON

  zwets

  committed
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Commits on Jan 3, 2025

• Merge pull request #98 from zwets/point-to-resfinder

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  fmaguire

  authored
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Commits on Dec 30, 2024

• Remove pointfinder tests

  zwets

  committed
  2127e9a

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• Remove standalone PointFinder hamronizer altogether

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  zwets

  committed
  b179b3c

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• Make pointfinder share resfinder's parser

  zwets

  committed
  9b90941

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• Minor fixes in tests

  zwets

  committed
  1b16d1c

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• ResFinder: fix failing test

  zwets

  committed
  b7b1599

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• ResFinder: pick correct database

  zwets

  committed
  3ea6fbb

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• ResFinder: fix variant phenotype collection

  zwets

  committed
  a6b4d45

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• ResFinder: leave coverage ratio alone

  zwets

  committed
  fcd2cef

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• ResFinder: fix error when coverage absent

  zwets

  committed
  366091d

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• Formatting fix

  zwets

  committed
  06f4380

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Commits on Dec 28, 2024

• AmrFinderPlus upgrade: update tests

  zwets

  committed
  5a6d274

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• Minor formatting fix to match project style

  zwets

  committed
  a789de8

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• AmrFinderPlus: nuc/prot detection is more subtle

  zwets

  committed
  a1ee7ef

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• Upgrade AMRFinderPlus hamronizer to 4.0.3

  zwets

  committed
  1cc5686

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Commits on Dec 27, 2024

• Update AFP version in README

  fmaguire

  committed
  3b407f5

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