Repositories list

• VCell-AI

  Public
  An AI-powered platform for discovering, analyzing, and exploring biomodels from the VCell database. Built as part of Google Summer of Code (GSoC25), this projec…

  pythondockertypescript+ 9

  pythondockertypescriptnextjsauth0biomodelsfastapivcellqdrantllms+ 2

  TypeScript

  •

  MIT License

  •6•7•19•5•Updated Mar 5, 2026Mar 5, 2026

• vcell

  Public

  virtualcell/vcell’s past year of commit activity
  Virtual Cell Framework

  simulationinstall4jvcell-clients+ 1

  simulationinstall4jvcell-clientsvcell-server

  Java

  •

  Other

  •28•113•216•30•Updated Mar 4, 2026Mar 4, 2026

• vcell-fvsolver

  Public
  VCell Finite Volume PDE solver

  C++

  •

  MIT License

  •0•1•1•3•Updated Mar 4, 2026Mar 4, 2026

• libvcell

  Public

  virtualcell/libvcell’s past year of commit activity
  Java

  •

  MIT License

  •0•1•0•0•Updated Mar 3, 2026Mar 3, 2026

• CompCellBio

  Public
  HTML

  •1•0•0•0•Updated Jan 28, 2026Jan 28, 2026

• vcell-ode

  Public
  The ODE focused solvers VCell utilizes in it's main applications

  C

  •0•1•4•0•Updated Dec 18, 2025Dec 18, 2025

• pyvcell

  Public
  Python

  •

  MIT License

  •0•1•2•2•Updated Dec 15, 2025Dec 15, 2025

• modelbricks-webapp

  Public
  webapp for exploring public models

  Handlebars

  •8•1•0•1•Updated Oct 16, 2025Oct 16, 2025

• openapi-generator

  Public
  OpenAPI Generator allows generation of API client libraries (SDK generation), server stubs, documentation and configuration automatically given an OpenAPI Spec …

  Java

  •

  Apache License 2.0

  •7.4k•0•0•0•Updated May 20, 2025May 20, 2025

• vcell-fiji

  Public
  A tool that loads VCell simulation results into ImageJ and performs statistical analysis.

  Java

  •

  MIT License

  •1•2•8•0•Updated Apr 23, 2025Apr 23, 2025

• vcell-jsbml

  Public
  JSBML Fork For VCell

  Java

  •

  GNU Lesser General Public License v2.1

  •27•0•0•0•Updated Mar 25, 2025Mar 25, 2025

• vcdb

  Public
  Shell

  •

  MIT License

  •0•3•12•0•Updated Jan 30, 2025Jan 30, 2025

• vcell-solvers

  Public
  Virtual Cell solvers

  virtual-cell-solvers

  virtual-cell-solvers

  C

  •6•6•6•0•Updated Nov 13, 2024Nov 13, 2024

• vcell-api-client

  Public
  Python client for VCell REST API

  Python

  •

  MIT License

  •0•0•0•0•Updated May 30, 2024May 30, 2024

• vcell-bioformats

  Public archive
  implementation of ImageDatasetService thrift interface (optionally used by VCell if separately installed)

  Java

  •0•2•0•0•Updated May 6, 2024May 6, 2024

• usermaterials

  Public
  MIT License

  •0•0•3•0•Updated Sep 13, 2022Sep 13, 2022

• vcellMichael

  Public archive
  Virtual Cell Framework

  Java

  •

  Other

  •28•0•0•0•Updated Jul 18, 2022Jul 18, 2022

• vcell_cli_utils

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Jun 24, 2021Jun 24, 2021

• test_suite

  Public archive
  Python

  •

  MIT License

  •0•0•5•0•Updated Mar 15, 2021Mar 15, 2021

• Biosimulators_utils

  Public archive
  Utilities for building standardized command-line interfaces for biosimulation software packages

  Python

  •

  MIT License

  •6•0•0•0•Updated Jan 27, 2021Jan 27, 2021

• GoogleSummerOfCode

  Public
  Main documentation site for NRNB GSoC project ideas and resources

  59•0•1•0•Updated Feb 5, 2020Feb 5, 2020

• vcell-imagej-fret-app

  Public archive
  Virtual Cell integration for ImageJ ** MOVED: https://github.com/virtualcell/vcell

  Java

  •0•2•0•0•Updated Oct 20, 2017Oct 20, 2017