A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

Multi-source Translation

A collection of awesome things regarding all omics.

Development repository for the Bioconductor package 'mixOmics '

Visual self-service analytics platform for big omics data.

Healthcare and biomedical datasets, for AI/ML

Standard bioinformatics pipelines for omics data from spaceflight and space-relevant experiments.

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

From geospatial to spatial -omics

Unified knowledge-driven network inference from omics data

Picotti lab data analysis package.

Prize-Collecting Steiner Forests for Interactomes

compositional data analysis toolbox

Medea: An omics AI agent for therapeutic discovery

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics

Open-Source Software for Omic Data Analysis and Visualization

Scale interactive spatial omics in the browser to thousands of images | https://rakaia.io/

Jigsaw-like AggMap: A Robust and Explainable Multi-Channel Omics Deep Learning Tool