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Commits on Dec 7, 2017

• pytest 3.3 dropped support for Python 3.3, but we still do

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• Clarify

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Commits on Dec 4, 2017

• Print which options are not supported in multi-core

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Commits on Nov 23, 2017

• Require the most recent xopen

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• Version 1.15

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Commits on Nov 22, 2017

• Add some comments

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Commits on Nov 20, 2017

• Add forgotten test files

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• Make --discard-untrimmed work with non-anchored linked adapters

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Commits on Nov 19, 2017

• Changelog

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• Switch to --cores=1 as default for now

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Commits on Nov 18, 2017

• Throw an error if FASTA/FASTQ input buffer is too small

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• PEP8

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Commits on Nov 17, 2017

• Add a multi-core section to the documentation

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• html_use_smartypants is deprecated

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• Support reading from stdin even when running on multiple cores

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• Refactor seqio.open a bit

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Commits on Nov 15, 2017

• Depend on xopen 0.3.0, which is faster on Python 3

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Commits on Nov 13, 2017

• Multi-core works with paired-end data

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• Test doc building from tox

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Commits on Nov 12, 2017

• Support multi-core paired-end if input file is interleaved

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• Legacy warning was displayed even though it shouldn’t

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Commits on Nov 11, 2017

• Attempt to fix RTD

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• Installing pytest helps when we want to use it

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• Fix: This did not work in Python 2

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• Support multi-core for interleaved paired-end data

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• Log info/warning messages with a prefix

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• Always report how many cores are used

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• Do not fallback to single-core mode, but error out

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• Flatten structure: Move main to __main__.py

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• Switch to pytest

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• Clean up gitignore

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• Move package directory to src/

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Commits on Nov 9, 2017

• Rename --threads to --cores (-j remains)

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• Let find_fastq_record_end correctly return 0 if needed

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• Do not tell users to run setup.py directly

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