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HPCing
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HPCing

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@HCEMM

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iquasere/README.md

Hi there! 👋

I was a PhD student, using bioinformatics to "Uncover the role of conductive nanomaterials in anaerobic digestion".

Tools for meta-omics analyses

My work has mostly been the development of tools for analyses of meta-omics data, i.e., the study of the collective genomes, transcriptomes or proteomes of a microbial community.

These are the main tools I have developed for meta-omics analyses:

UPIMAPI, reCOGnizer and KEGGCharter

UPIMAPI, reCOGnizer and KEGGCharter are tools developed for the analyses of omics data, and optimized for handling the challenges of meta-omics.

MOSCA

MOSCA is a powerful pipeline developed for metagenomics (MG), metatranscriptomics (MT) and metaproteomics (MP) integrated analyses.

Finally, some metrics about my coding routine:

Code Time

I'm an Early 🐤

🌞 Morning                1208 commits        ██████░░░░░░░░░░░░░░░░░░░   22.53 % 
🌆 Daytime                2789 commits        █████████████░░░░░░░░░░░░   52.02 % 
🌃 Evening                1088 commits        █████░░░░░░░░░░░░░░░░░░░░   20.29 % 
🌙 Night                  276 commits         █░░░░░░░░░░░░░░░░░░░░░░░░   05.15 % 

📅 I'm Most Productive on Wednesday

Monday                   904 commits         ████░░░░░░░░░░░░░░░░░░░░░   16.86 % 
Tuesday                  1092 commits        █████░░░░░░░░░░░░░░░░░░░░   20.37 % 
Wednesday                1446 commits        ███████░░░░░░░░░░░░░░░░░░   26.97 % 
Thursday                 792 commits         ████░░░░░░░░░░░░░░░░░░░░░   14.77 % 
Friday                   720 commits         ███░░░░░░░░░░░░░░░░░░░░░░   13.43 % 
Saturday                 44 commits          ░░░░░░░░░░░░░░░░░░░░░░░░░   00.82 % 
Sunday                   363 commits         ██░░░░░░░░░░░░░░░░░░░░░░░   06.77 % 

📊 This Week I Spent My Time On

💬 Programming Languages: 
No Activity Tracked This Week

🐱‍💻 Projects: 
No Activity Tracked This Week

I Mostly Code in Python

Python                   13 repos            ████████░░░░░░░░░░░░░░░░░   33.33 % 
HTML                     9 repos             ██████░░░░░░░░░░░░░░░░░░░   23.08 % 
Java                     4 repos             ███░░░░░░░░░░░░░░░░░░░░░░   10.26 % 
Shell                    4 repos             ███░░░░░░░░░░░░░░░░░░░░░░   10.26 % 
JavaScript               1 repo              █░░░░░░░░░░░░░░░░░░░░░░░░   02.56 % 

Last Updated on 31/03/2026 19:47:34 UTC

Pinned Loading

  1. reCOGnizer reCOGnizer Public

    A tool for domain based annotation with databases from the Conserved Domains Database

    HTML 30 3

  2. UPIMAPI UPIMAPI Public

    UniProt Id Mapping through API

    Python 38 4

  3. KEGGCharter KEGGCharter Public

    A tool for representing genomic potential and transcriptomic expression into KEGG pathways

    Python 61 7