Replace `--var_prefix` in all commands in use cases to the correct parameter `--protein_prefix` https://github.com/bigbio/pgatk/blob/b9f8d170b076c3c6b43df488c073d4f433eadeac/docs/use-cases.md?plain=1#L60
Replace
--var_prefixin all commands in use cases to the correct parameter--protein_prefixpgatk/docs/use-cases.md
Line 60 in b9f8d17