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  1. staphscope-typing-tool staphscope-typing-tool Public

    StaphScope is a comprehensive bioinformatics tool for Staphylococcus aureus genomic analysis including MLST typing, spa typing, SCCmec analysis, antimicrobial resistance detection, virulence factor…

    Python 15

  2. EcoliTyper EcoliTyper Public

    EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for clinical microbiology, outbreak investigations, and genomic res…

    C 8

  3. MEscope MEscope Public

    MEscope is a lightweight CLI tool for analyzing multi-omics data in ME/CFS. It integrates ERV activity, viral signals, gene expression, and methylation patterns to identify disease-associated bioma…

    1

  4. Multi-Bacteria-Genomic-Workflow Multi-Bacteria-Genomic-Workflow Public

    Multi-Bacteria Genomic Workflow

    1

  5. VIRA VIRA Public

    1

  6. acinetoscope acinetoscope Public

    AcinetoScope A Unified Pipeline for Comprehensive Acinobacter baumannii & Species Complex Genotyping & Epidemiology

    Python 5