AQ Laboratory

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1. openfold-3 openfold-3 Public

   A fully open source biomolecular structure prediction model based on AlphaFold3

   Python 875 171

2. genie3 genie3 Public

   Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on unconditional generation, motif scaffolding, and binder design while re…

   Python 134 19

3. openfold openfold Public

   Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

   Python 3.4k 692

4. confornets confornets Public

   Latents-based conformational control in OpenFold3.

   Jupyter Notebook 80 3

5. proteinnet proteinnet Public

   Standardized data set for machine learning of protein structure

   Python 920 138

6. hsm hsm Public

   Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

   Jupyter Notebook 74 22