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Preparing release 1.2.5 - #499

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maxulysse merged 86 commits into
SciLifeLab:masterfrom
maxulysse:1.2.5
Nov 30, 2017
Merged

maxulysse merged 86 commits into
SciLifeLab:masterfrom
maxulysse:1.2.5

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@maxulysse

@maxulysse maxulysse commented Nov 22, 2017

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  • Add CAW Contributing Guidelines
  • Add Issue Templates
  • Add Release Checklist
  • Update Nextflow to 0.26.0 (new fancy report + AWS Batch)
  • Add extra time for ANNOTATEVEP testing scenario as it was almost always failing
  • Replace bundleDir by params.genome_base
  • Update MultiQC to 1.3 (MEGAQC FTW)
  • Add --outDir
  • Add base.config for ConcatVCF process
  • Add awsbatch profile
  • Add aws-batch.config config file
  • Move and rename some test files
  • Add new --noBAMQC params (failing in AWS Batch, and sometimes on Bianca)
  • Fix file specification for recalibrationReport in RecalibrateBam process (got error on AWS Batch)

@maxulysse

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I'm sorry about the huge PR and the amount of commits, but one thing lead to another and before I knew it, that was here...

@maxulysse maxulysse self-assigned this Nov 30, 2017
@maxulysse
maxulysse merged commit 9fd0a45 into SciLifeLab:master Nov 30, 2017
jherrero referenced this pull request in UCL-BLIC/Sarek_v2.2.1 Apr 11, 2019
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