envlist = quality,unit,doc

isolated_build = True

extras = quality

commands =

pre-commit run --all-files

description =

Quality tests

extras = tests,reports,combine,vis

deps=

git+https://github.com/PEtab-dev/petab_test_suite@main

git+https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab.git@master\#subdirectory=src/python

commands =

python -m pip install sympy>=1.12.1

python -m pytest --cov=petab --cov-report=xml --cov-append --durations=10 \

tests

description =

Basic tests

description = Build the documentation

extras = doc,vis

deps=

# workaround for m2r2 issue with py3.13: No module named 'pkg_resources'

# see also: https://github.com/CrossNox/m2r2/issues/72

setuptools

allowlist_externals = rm

commands =

rm -rf {tox_root}/doc/build

sphinx-build -W -b html . build/html

changedir = {tox_root}/doc