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Makefile
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# $Id: Makefile 1856 2017-12-06 08:36:03Z lnerger $
#######################################################
# Generic Makefile for to build PDAF library #
# To choose the architecture set $PDAF_ARCH #
# #
# Armin Corbin - University of Bonn #
#######################################################
#######################################################
# definitions for highlighting outputs
bold := $(shell tput bold)
sgr0 := $(shell tput sgr0)
#######################################################
# Include machine-specific definitions
# For available include files see directory make.arch
# To choose a file, set PDAF_ARCH either here or by an
# environment variable.
include ./make.arch/$(PDAF_ARCH).h
$(info $(bold)use machine-specific definitions in $(PDAF_ARCH).h$(sgr0))
#######################################################
OBJDIR:=build
INCDIR:=include
LIBDIR:=lib
SRCDIR:=src
EXTDIR:=external
## /src/Makefile - please note:
## If you like to place the Makefile in src/ for a pre-PDAF3
## workflow, you can use these alternative specifications.
## In this case also change in the include line above to
## include ../make.arch/$(PDAF_ARCH).h
## To generate the dependences file in src/ see the
## comment at the end of this file.
#OBJDIR:=../build
#INCDIR:=../include
#LIBDIR:=../lib
#SRCDIR:=.
#EXTDIR:=../external
#######################################################
# List of sources for PDAF library
#######################################################
# Modules used in PDAF
SRC_MOD_PDAF = PDAF_timer.F90 \
PDAF_memcount.F90 \
PDAF_mod_parallel.F90 \
PDAF_mod_core.F90 \
PDAFobs.F90
# Generic routines in PDAF
SRC_PDAF_GEN = PDAF_da.F90 \
PDAF.F90 \
PDAF_cb_procedures.F90 \
PDAF_forecast.F90 \
PDAF_iau.F90 \
PDAF_init.F90 \
PDAF_utils.F90 \
PDAF_get.F90 \
PDAF_set.F90 \
PDAF_info.F90 \
PDAF_utils_filters.F90 \
PDAF_analysis_utils.F90 \
PDAF_communicate_ens.F90 \
PDAF_smoother.F90 \
PDAF_sample.F90 \
PDAF_diag.F90 \
PDAF_comm_obs.F90 \
PDAF_get_state.F90 \
PDAF_put_state_prepost.F90 \
PDAF_prepost.F90 \
PDAF_assimilate_prepost.F90 \
PDAF3_init.F90 \
PDAF3_assimilate_ens.F90 \
PDAF3_put_state_ens.F90 \
PDAF3_assim_offline_ens.F90 \
PDAF3_assimilate_ens_nondiagR.F90 \
PDAF3_put_state_ens_nondiagR.F90 \
PDAF3_assim_offline_ens_nondiagR.F90
# Routines for PDAFlocal
SRC_PDAFLOCAL = PDAFlocal.F90 \
PDAFlocal_callback.F90 \
PDAFlocal_assimilate_ens.F90 \
PDAFlocal_put_state_ens.F90 \
PDAFlocal_assimilate_3dvars.F90 \
PDAFlocal_put_state_3dvars.F90
# Specific PDAF-routines for SEIK
SRC_SEIK = PDAF_seik.F90 \
PDAF_seik_analysis.F90 \
PDAF_seik_analysis_newT.F90 \
PDAF_seik_analysis_trans.F90 \
PDAF_seik_update.F90 \
PDAF_put_state_seik.F90 \
PDAF_assimilate_seik.F90
# Specific PDAF-routines for local SEIK
SRC_LSEIK = PDAF_lseik.F90 \
PDAF_lseik_analysis.F90 \
PDAF_lseik_analysis_trans.F90 \
PDAF_lseik_update.F90 \
PDAF_put_state_lseik.F90 \
PDAF_assimilate_lseik.F90
# Specific PDAF-routines for SEEK
SRC_SEEK = PDAF_seek.F90 \
PDAF_seek_analysis.F90 \
PDAF_seek_update.F90 \
PDAF_put_state_seek.F90 \
PDAF_assimilate_seek.F90
# Specific PDAF-routines for EnKF
SRC_ENKF = PDAF_enkf.F90 \
PDAF_enkf_analysis_rlm.F90 \
PDAF_enkf_analysis_rsm.F90 \
PDAF_enkf_update.F90 \
PDAF_put_state_enkf.F90 \
PDAF_assimilate_enkf.F90
# Specific PDAF-routines for ETKF
SRC_ETKF = PDAF_etkf.F90 \
PDAF_etkf_analysis.F90 \
PDAF_etkf_analysis_T.F90 \
PDAF_etkf_analysis_fixed.F90 \
PDAF_etkf_update.F90 \
PDAF_put_state_etkf.F90 \
PDAF_assimilate_etkf.F90
# Specific PDAF-routines for LETKF
SRC_LETKF = PDAF_letkf.F90 \
PDAF_letkf_analysis.F90 \
PDAF_letkf_analysis_T.F90 \
PDAF_letkf_analysis_fixed.F90 \
PDAF_letkf_update.F90 \
PDAF_put_state_letkf.F90 \
PDAF_assimilate_letkf.F90
# Specific PDAF-routines for ESTKF
SRC_ESTKF = PDAF_estkf.F90 \
PDAF_estkf_analysis.F90 \
PDAF_estkf_analysis_fixed.F90 \
PDAF_estkf_update.F90 \
PDAF_put_state_estkf.F90 \
PDAF_assimilate_estkf.F90
# Specific PDAF-routines for LESTKF
SRC_LESTKF = PDAF_lestkf.F90 \
PDAF_lestkf_analysis.F90 \
PDAF_lestkf_analysis_fixed.F90 \
PDAF_lestkf_update.F90 \
PDAF_put_state_lestkf.F90 \
PDAF_assimilate_lestkf.F90
# Specific PDAF-routines for LEnKF
SRC_LENKF = PDAF_lenkf.F90 \
PDAF_put_state_lenkf.F90 \
PDAF_assimilate_lenkf.F90 \
PDAF_lenkf_update.F90 \
PDAF_lenkf_analysis_rsm.F90
# Specific PDAF-routines for NETF
SRC_NETF = PDAF_netf.F90 \
PDAF_netf_analysis.F90 \
PDAF_netf_update.F90 \
PDAF_put_state_netf.F90 \
PDAF_assimilate_netf.F90
# Specific PDAF-routines for LNETF
SRC_LNETF = PDAF_lnetf.F90 \
PDAF_lnetf_analysis.F90 \
PDAF_lnetf_update.F90 \
PDAF_put_state_lnetf.F90 \
PDAF_assimilate_lnetf.F90
# Specific PDAF-routines for PF
SRC_PF = PDAF_pf.F90 \
PDAF_pf_analysis.F90 \
PDAF_pf_update.F90 \
PDAF_put_state_pf.F90 \
PDAF_assimilate_pf.F90
# Specific PDAF-routines for LKNETF
SRC_LKNETF = PDAF_lknetf.F90 \
PDAF_lknetf_analysis_step.F90 \
PDAF_lknetf_update_step.F90 \
PDAF_lknetf_analysis_sync.F90 \
PDAF_lknetf_update_sync.F90 \
PDAF_put_state_lknetf.F90 \
PDAF_assimilate_lknetf.F90
# Specific PDAF-routines for ENSRF with serial observation processing
SRC_ENSRF = PDAF_ensrf.F90 \
PDAF_ensrf_analysis.F90 \
PDAF_ensrf_update.F90 \
PDAF_put_state_ensrf.F90 \
PDAF_assimilate_ensrf.F90
# Specific PDAF-routines for generating observations
SRC_GENOBS = PDAF_genobs.F90 \
PDAF_generate_obs_update.F90 \
PDAF_put_state_generate_obs.F90 \
PDAF_generate_obs.F90
# Specific PDAF-routines for 3DVAR
SRC_3DVAR = PDAF_3dvar.F90 \
PDAF_3dvar_optim.F90 \
PDAF_3dvar_analysis_cvt.F90 \
PDAF_3dvar_update.F90 \
PDAF_en3dvar_optim.F90 \
PDAF_en3dvar_analysis_cvt.F90 \
PDAF_en3dvar_update.F90 \
PDAF_hyb3dvar_optim.F90 \
PDAF_hyb3dvar_analysis_cvt.F90\
PDAF_hyb3dvar_update.F90 \
PDAF3_assimilate_3dvars.F90 \
PDAF3_assimilate_3dvars_nondiagR.F90 \
PDAF3_put_state_3dvars.F90 \
PDAF3_put_state_3dvars_nondiagR.F90 \
PDAF3_assim_offline_3dvars.F90 \
PDAF3_assim_offline_3dvars_nondiagR.F90 \
PDAF_put_state_3dvar.F90 \
PDAF_assimilate_3dvar.F90 \
PDAF_put_state_en3dvar_lestkf.F90 \
PDAF_put_state_en3dvar_estkf.F90 \
PDAF_assimilate_en3dvar_lestkf.F90 \
PDAF_assimilate_en3dvar_estkf.F90 \
PDAF_put_state_hyb3dvar_estkf.F90 \
PDAF_put_state_hyb3dvar_lestkf.F90 \
PDAF_assimilate_hyb3dvar_lestkf.F90 \
PDAF_assimilate_hyb3dvar_estkf.F90
# Routines for PDAF-OMI
SRC_PDAFOMI = PDAFomi_obs_f.F90 \
PDAFomi_obs_l.F90 \
PDAFomi_dim_obs_l.F90 \
PDAFomi_obs_op.F90 \
PDAFomi_obs_diag.F90 \
PDAFomi.F90 \
PDAFomi_callback.F90 \
PDAFomi_assimilate_ens.F90 \
PDAFomi_assimilate_ens_nondiagR.F90 \
PDAFomi_put_state_ens.F90 \
PDAFomi_put_state_ens_nondiagR.F90 \
PDAFomi_assimilate_3dvars.F90 \
PDAFomi_put_state_3dvars.F90 \
PDAFlocalomi_assimilate_ens.F90 \
PDAFlocalomi_put_state_ens.F90 \
PDAFlocalomi_assimilate_3dvars.F90 \
PDAFlocalomi_put_state_3dvars.F90
# collect all PDAF sources
SRC_PDAF = $(SRC_MOD_PDAF) $(SRC_PDAFOMI) $(SRC_PDAFLOCAL) $(SRC_PDAF_GEN) \
$(SRC_ESTKF) $(SRC_LESTKF) $(SRC_ETKF) $(SRC_LETKF) \
$(SRC_SEIK) $(SRC_LSEIK) $(SRC_ENKF) $(SRC_LENKF) \
$(SRC_NETF) $(SRC_LNETF) $(SRC_LKNETF) $(SRC_PF) \
$(SRC_ENSRF) $(SRC_GENOBS) $(SRC_3DVAR)
# external sources
SRC_SANGOMA = $(EXTDIR)/SANGOMA/SANGOMA_quicksort.F90
#######################################################
# object files
#######################################################
OBJ_PDAF := $(SRC_PDAF:%.F90=$(OBJDIR)/%.o)
OBJ_PDAF_VAR = $(SRC_3DVAR:%.F90=$(OBJDIR)/%.o)
OBJ_SANGOMA = $(OBJDIR)/SANGOMA_quicksort.o
# External optimizer libraries implicitly build by make
OBJ_OPTIM = $(EXTDIR)/CG+_mpi/cgfam.o $(EXTDIR)/CG+_mpi/cgsearch.o \
$(EXTDIR)/CG+/cgfam.o $(EXTDIR)/CG+/cgsearch.o \
$(EXTDIR)/LBFGS/lbfgsb.o $(EXTDIR)/LBFGS/linpack.o \
$(EXTDIR)/LBFGS/timer.o
#######################################################
# compiler instructions
COMPILE.f90 = $(FC) $(OPT) $(MPI_INC) $(CPP_DEFS) -c -o $@ $(MODULEOPT) $(INCDIR)
#######################################################
.PHONY: all
all: directories libpdaf libpdafvar
.PHONY: libpdaf
libpdaf: $(LIBDIR)/libpdaf-d.a
.PHONY: libpdafvar
libpdafvar: $(LIBDIR)/libpdaf-var.a
#######################################################
$(LIBDIR)/libpdaf-d.a: $(OBJ_PDAF) $(OBJ_SANGOMA)
$(info $(bold)Generate Filter library$(sgr0))
$(AR) rs $(AR_SPEC) $(LIBDIR)/libpdaf-d.a $(OBJ_PDAF) $(OBJ_SANGOMA)
$(LIBDIR)/libpdaf-var.a: $(OBJ_PDAF) $(OBJ_PDAF_VAR) $(OBJ_OPTIM) $(OBJ_SANGOMA)
$(info $(bold)Generate Var Filter library$(sgr0))
$(AR) rs $(AR_SPEC) $(LIBDIR)/libpdaf-var.a $(OBJ_PDAF) $(OBJ_PDAF_VAR) $(OBJ_OPTIM) \
$(OBJ_SANGOMA)
# use pattern rule to create rules for all object files
$(OBJDIR)/%.o: $(SRCDIR)/%.F90
$(info $(bold)compile $<$(sgr0))
$(COMPILE.f90) $<
# explicite rule for sangoma
$(OBJ_SANGOMA) : $(SRC_SANGOMA)
$(info $(bold)compile external dependency $<$(sgr0))
$(COMPILE.f90) $<
#######################################################
MISSINGDIRS:= $(INCDIR) $(OBJDIR) $(LIBDIR)
.PHONY: directories
directories: $(MISSINGDIRS)
$(MISSINGDIRS):
mkdir -p $@
#######################################################
.PHONY: clean
clean :
$(info $(bold)clean PDAF$(sgr0))
rm -rf $(OBJDIR)/*.o
rm -rf $(INCDIR)/*.mod
rm -rf $(LIBDIR)/libpdaf-d.a
rm -rf $(LIBDIR)/libpdaf-var.a
rm -rf $(EXTDIR)/CG+/*.o
rm -rf $(EXTDIR)/CG+_mpi/*.o
rm -rf $(EXTDIR)/LBFGS/*.o
#######################################################
.PHONY: listarch
listarch:
@echo Available architecture-specific input files for PDAF_ARCH
@echo ---------------------------------------------------------
@ls -1 ../make.arch | cut -d"." -f1
#######################################################
# include file containing dependencies for parallel
# execution of make
# created with ./external/mkdepends/mkdepends ./src ./external/* '$(OBJDIR)'
include Depends
# If you place Makefile in src/ you need to run
# ../external/mkdepends/mkdepends . ../external/* '$(OBJDIR)'