Package: arrayQM

Title: Quality metrics report for microarray data sets

Version: 3.39.2

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Joris Meys <[email protected]>

BugReports: https://github.com/JoFAM/arrayQualityMetrics/issues

VignetteBuilder: knitr

Depends:

Suggests: ALLMLL, CCl4, BiocStyle, knitr

Imports: affy, affyPLM (>= 1.27.3), Biobase, genefilter,

graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter,

lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats,

utils, vsn (>= 3.23.3), XML, svglite

Description: This package generates microarray quality metrics reports for

data in Bioconductor microarray data containers (ExpressionSet, NChannelSet,

AffyBatch). One and two color array platforms are supported. The package is adapted for students following the omics course at faculty Bioscience Engineering, Ghent University. Reliance on beadarray is removed as the package is no longer available.

License: LGPL (>= 2)

biocViews: Microarray, QualityControl, OneChannel, TwoChannel, ReportWriting

Collate: classes.R affyspecific.r annotateSvg.R arrayQualityMetrics.r

boxplot.r density.r globalParameters.R heatmap.r makeColors.R maplot.r meansd.r

outlier.R pca.r prepdata.r probesmap.r spatial.r writereport.r XYfromGAL.r