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5.2 SUP with mv

Status: Open.

#428 In HKU-BAL/Clair3;

· leonschuetz opened on Mar 11, 2026

Is it possible to change the allele fraction threshold in Clair3?

Status: Open.

#427 In HKU-BAL/Clair3;

· dppss90008 opened on Mar 11, 2026

ERROR: BAM file not found but file is specified using absolute path

Status: Open.

#426 In HKU-BAL/Clair3;

· rasabi21 opened on Mar 5, 2026

Recommendations for using Clair3 on viral samples with intrahost diversity / quasispecies?

Status: Open.

#424 In HKU-BAL/Clair3;

· charlesfoster opened on Feb 25, 2026

Docker image for arm64 architecture (Nvidia Jetson AGX Orin)

Status: Open.

#417 In HKU-BAL/Clair3;

· hakobyansiras opened on Jan 12, 2026

Representation of MNP

enhancementNew feature or requestNew feature or request

Status: Open.

#407 In HKU-BAL/Clair3;

· lisosome opened on Sep 11, 2025

Conda build for macos

enhancementNew feature or requestNew feature or request

Status: Open.

#403 In HKU-BAL/Clair3;

· jodyphelan opened on Aug 16, 2025

Please update samtools used in docker image

enhancementNew feature or requestNew feature or request

Status: Open.

#400 In HKU-BAL/Clair3;

· mp15 opened on Aug 8, 2025

Favor Pileup over Full_alignment when SNP has high QUAL and Full alignment incorrectly assigns as Refcall

enhancementNew feature or requestNew feature or request

Status: Open.

#360 In HKU-BAL/Clair3;

· wshropshire opened on Feb 13, 2025

Better error message when there is no full-alignment output

enhancementNew feature or requestNew feature or request

Status: Open.

#350 In HKU-BAL/Clair3;

· dgslos opened on Dec 17, 2024

show more allele counts in INFO

enhancementNew feature or requestNew feature or request

Status: Open.

#320 In HKU-BAL/Clair3;

· hoyonh opened on Jul 12, 2024

choose pileup call over full-alignment call if pileup call has 1) a way higher QUAL, 2) is an indel

enhancementNew feature or requestNew feature or request

Status: Open.

#318 In HKU-BAL/Clair3;

· drtconway opened on Jul 2, 2024