Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
AlgoLab
/
LightStringGraph
Public
Notifications
You must be signed in to change notification settings
Fork
1
Star
11
Code
Issues
0
Pull requests
0
Actions
Projects
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Projects
Security and quality
Insights
Commits
Breadcrumbs
History for
LightStringGraph
src
on
develop
User selector
All users
Datepicker
All time
Commit history
Commits on May 15, 2015
Fix header inclusion and pointer arithmetic
yp
committed
d2a48dc
View commit details
Copy full SHA for d2a48dc
View code at this point
Browse repository at this point
Reduce I/O amount while writing/reading bucket files in the reduction step
yp
committed
c82f662
View commit details
Copy full SHA for c82f662
View code at this point
Browse repository at this point
Commits on May 14, 2015
Improve I/O also in reduction and output steps
yp
committed
d07b6c2
View commit details
Copy full SHA for d07b6c2
View code at this point
Browse repository at this point
Commits on May 7, 2015
Fix serialization/deserialization of seed intervals
yp
committed
1e33bb7
View commit details
Copy full SHA for 1e33bb7
View code at this point
Browse repository at this point
Better I/O management and abstraction
yp
committed
e2d6a64
View commit details
Copy full SHA for e2d6a64
View code at this point
Browse repository at this point
Use zlib for reading from files
yp
committed
5fe9b12
View commit details
Copy full SHA for 5fe9b12
View code at this point
Browse repository at this point
Fix serialization/deserialization of seed intervals (fix #1)
yp
committed
0f81863
View commit details
Copy full SHA for 0f81863
View code at this point
Browse repository at this point
Commits on Apr 22, 2015
Avoid using pointers whenever is possible
yp
committed
4e392c2
View commit details
Copy full SHA for 4e392c2
View code at this point
Browse repository at this point
Commits on Apr 21, 2015
Use C-style I/O in critical parts
yp
committed
0ebe79d
View commit details
Copy full SHA for 0ebe79d
View code at this point
Browse repository at this point
Commits on Apr 20, 2015
Even faster 'compressed' write (maybe)
yp
committed
0854b57
View commit details
Copy full SHA for 0854b57
View code at this point
Browse repository at this point
Faster 'compressed' write (maybe)
yp
committed
860b846
View commit details
Copy full SHA for 860b846
View code at this point
Browse repository at this point
Commits on Apr 17, 2015
Use correct separators in ASQG format
yp
committed
dc724f3
View commit details
Copy full SHA for dc724f3
View code at this point
Browse repository at this point
Commits on Mar 10, 2015
Write less bytes
Marco Previtali
committed
b410b44
View commit details
Copy full SHA for b410b44
View code at this point
Browse repository at this point
Commits on Sep 29, 2014
Add a parameter to disable rev&compl reads
Marco Previtali
committed
367a6c3
View commit details
Copy full SHA for 367a6c3
View code at this point
Browse repository at this point
Remove edges of type r->r
Marco Previtali
committed
f17bba1
View commit details
Copy full SHA for f17bba1
View code at this point
Browse repository at this point
Fix output of VT entry in ASQG format
Marco Previtali
committed
b7cc691
View commit details
Copy full SHA for b7cc691
View code at this point
Browse repository at this point
Commits on Sep 24, 2014
Fix edge "multiplexing"
yp
committed
fc69e5f
View commit details
Copy full SHA for fc69e5f
View code at this point
Browse repository at this point
Let lsg manage rev&compl reads
Marco Previtali
committed
7056fcb
View commit details
Copy full SHA for 7056fcb
View code at this point
Browse repository at this point
Commits on Jul 17, 2014
Make the filename of the reads optional (with basename as default)
yp
committed
358b757
View commit details
Copy full SHA for 358b757
View code at this point
Browse repository at this point
Allow to use only numeric IDs in the ASQG format (instead of FASTA IDs)
yp
committed
d2aa436
View commit details
Copy full SHA for d2aa436
View code at this point
Browse repository at this point
Fix read lexical order reconstruction when the read length is specified
yp
committed
dfe311d
View commit details
Copy full SHA for dfe311d
View code at this point
Browse repository at this point
Fix command-line parameter conversion
yp
committed
2b8389f
View commit details
Copy full SHA for 2b8389f
View code at this point
Browse repository at this point
Commits on Jul 16, 2014
Clean repository
yp
committed
0f98d97
View commit details
Copy full SHA for 0f98d97
View code at this point
Browse repository at this point
Commits on Jul 9, 2014
Add two types of interval managers (plain and RLE)
Marco Previtali
committed
d5ff135
View commit details
Copy full SHA for d5ff135
View code at this point
Browse repository at this point
Commits on Jul 8, 2014
Remove old commented code
Marco Previtali
committed
15f51e5
View commit details
Copy full SHA for 15f51e5
View code at this point
Browse repository at this point
Let interval manager work in a RLE-like fashion
Marco Previtali
committed
fb4358f
View commit details
Copy full SHA for fb4358f
View code at this point
Browse repository at this point
Add operator== to arcInterval
Marco Previtali
committed
2528bd7
View commit details
Copy full SHA for 2528bd7
View code at this point
Browse repository at this point
Commits on Jul 7, 2014
Let lsg output the termination time
Marco Previtali
committed
1d214c2
View commit details
Copy full SHA for 1d214c2
View code at this point
Browse repository at this point
Commits on Jul 4, 2014
New version of extend_arc_labels (no LCP)
Marco Previtali
committed
c8e2ead
View commit details
Copy full SHA for c8e2ead
View code at this point
Browse repository at this point
Remove commented code
Marco Previtali
committed
f9592da
View commit details
Copy full SHA for f9592da
View code at this point
Browse repository at this point
Remove commented and dead code
Marco Previtali
committed
2a78e3b
View commit details
Copy full SHA for 2a78e3b
View code at this point
Browse repository at this point
Use 'slim' structures
Show description for 808673c
yp
committed
808673c
View commit details
Copy full SHA for 808673c
View code at this point
Browse repository at this point
Commits on Jul 1, 2014
Remove GSA from extend_*
Marco Previtali
committed
182696a
View commit details
Copy full SHA for 182696a
View code at this point
Browse repository at this point
Commits on May 28, 2014
Split overlap graph reduction and ASQG output in two programs
yp
committed
1eac843
View commit details
Copy full SHA for 1eac843
View code at this point
Browse repository at this point
Perform overlap graph reduction on buckets of reads
yp
committed
704d558
View commit details
Copy full SHA for 704d558
View code at this point
Browse repository at this point
Previous
Next
You can’t perform that action at this time.
Marco Previtali