[bug] Error, impossible heap size in WSL #648
Description
Description
I'm trying to run the Tutorial, but i always get the same error when running the verification step
bactopia -profile test,standard
When it reaches the qc tools, the script retried 3 times then it stops and gives the following error:
Command output:
Skipping error correction since fastp was used
Error occurred during initialization of VM
Could not reserve enough space for 6267216297984 KB object heap
Command error:
Skipping error correction since fastp was used
java -ea --add-modules jdk.incubator.vector -Xmx6120328397m -Xms6120328397m -cp /home/ice/.bactopia/conda/bioconda--bactopia-qc-1.0.3/opt/bbmap-39.52-0/current/ jgi.ReformatReads -Xmx6120328397 in=filt-r1.fq out=subsample-r1.fq in2=filt-r2.fq out2=subsample-r2.fq samplebasestarget=35824200 sampleseed=42 overwrite=t
Error occurred during initialization of VM
Could not reserve enough space for 6267216297984 KB object heap
For some reason, the programs tries to create a large object heap and I cannot find a way to limit the size of the object.
I'm running the test on WSL, using the latest version of NextFlow and Java openjdk v17.